Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D04f
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   116   4e-27
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   116   4e-27
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   4.3  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    26   5.7  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    26   5.7  
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    26   7.5  
Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    25   10.0 
Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical pr...    25   10.0 
AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical ...    25   10.0 

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  116 bits (279), Expect = 4e-27
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +1

Query: 52  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 231
           +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +
Sbjct: 25  TQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPI 84

Query: 232 KRCKHFELGGDKKRKGQMIQF 294
           KRCKHFELGG KK +GQ+IQF
Sbjct: 85  KRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  116 bits (279), Expect = 4e-27
 Identities = 51/81 (62%), Positives = 61/81 (75%)
 Frame = +1

Query: 52  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 231
           +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +
Sbjct: 25  TQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPI 84

Query: 232 KRCKHFELGGDKKRKGQMIQF 294
           KRCKHFELGG KK +GQ+IQF
Sbjct: 85  KRCKHFELGGQKKSRGQVIQF 105


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 47  RYHSTKSPRKGTLPRV-EDVMIVNSR 121
           +Y +TKS R+G LP + ED++    R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 184 LRLECADCKVRSQVALKRCKHFELGGDKK 270
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 265 CHHQAQSACISSMQPVISPCNQHTQ 191
           C  Q QS C+   QPV S C    Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = -3

Query: 268 SCHHQAQSACISSMQPV---ISPCNQHTQDGAQ 179
           +C  Q QS+C+   QP     S CN    +  Q
Sbjct: 196 ACQQQCQSSCVQQQQPAKQCASSCNTQCTNACQ 228


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 265 CHHQAQSACISSMQPVISPCNQHTQ 191
           C  Q QS C+   QPV S C    Q
Sbjct: 137 CQQQCQSTCVQQQQPV-SQCQPQCQ 160



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
 Frame = -3

Query: 268 SCHHQAQSACISSMQPV---ISPCNQHTQDGAQ 179
           +C  Q QS+C+   QP     S CN    +  Q
Sbjct: 196 ACQQQCQSSCVQQQQPAKQCASSCNTQCTNACQ 228


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 85  QRAFPW-TFCTVIPCVLCGIYIFC 17
           QR++P+ TF   +  +LC +YI C
Sbjct: 30  QRSYPFQTFLAFLDFMLCALYIHC 53


>Z93382-2|CAB07612.2|  639|Caenorhabditis elegans Hypothetical
           protein F45G2.3 protein.
          Length = 639

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 202 DCKVRSQVALKRCKHFELGGDK 267
           +C V  +  LK C   ELGGDK
Sbjct: 193 ECSVYEKCNLKNCFTGELGGDK 214


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -3

Query: 133 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTS 8
           +H    V+  NV+ P Q   P     V+  VLC I   C  S
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNS 79


>Z70681-2|CAA94578.2|  203|Caenorhabditis elegans Hypothetical
           protein C30F2.2 protein.
          Length = 203

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = +2

Query: 26  VNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKL 181
           VNAT+ +R    ++  +  + + +   I N+ ++   P P S+RR + LR+L
Sbjct: 108 VNATRRSR----RTALETAVDKTQQREIENNWISQHIPAPESRRRDRSLRRL 155


>AC006610-6|AAK85452.1|  395|Caenorhabditis elegans Hypothetical
           protein C30F12.6 protein.
          Length = 395

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 2/18 (11%)
 Frame = -3

Query: 67  TFCTV--IPCVLCGIYIF 20
           T CTV    C++CGI+IF
Sbjct: 144 TMCTVKRATCIICGIWIF 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,209,660
Number of Sequences: 27780
Number of extensions: 137608
Number of successful extensions: 449
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)