Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D03f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0060 + 17576427-17578781                                         29   3.0  
03_01_0403 - 3133568-3134440,3135131-3135494,3136341-3136408,313...    28   4.0  

>05_04_0060 + 17576427-17578781
          Length = 784

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 449 TGPAEVGSE-VGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRTI 321
           T PA   ++ VGAA     V  +E  +E G  THT A AAGR +
Sbjct: 197 TPPARCNNKLVGAA---SFVYGNETGDEVGHGTHTAATAAGRFV 237


>03_01_0403 -
           3133568-3134440,3135131-3135494,3136341-3136408,
           3137184-3137857,3138093-3138105
          Length = 663

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -1

Query: 428 SEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAG 330
           SEVG   TSG   +   R+  G  THT + A G
Sbjct: 58  SEVGPLNTSGGAEYRSPRDRVGHGTHTASTAVG 90


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,840,070
Number of Sequences: 37544
Number of extensions: 166344
Number of successful extensions: 420
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)