Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D03f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L34935-1|AAA73521.1|  197|Drosophila melanogaster RNA binding pr...    31   0.72 
AY071363-1|AAL48985.1|  200|Drosophila melanogaster RE39606p pro...    31   0.72 
AE014134-1804|AAF52890.1|  200|Drosophila melanogaster CG5655-PA...    31   0.72 
AE014296-3795|EAA46074.2|  307|Drosophila melanogaster CG12460-P...    30   2.2  

>L34935-1|AAA73521.1|  197|Drosophila melanogaster RNA binding
           protein protein.
          Length = 197

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -3

Query: 519 ACXAMNGTEMLGATLKVEISR 457
           AC  +NG+E+LG+ L+VEIS+
Sbjct: 59  ACDILNGSELLGSQLRVEISK 79


>AY071363-1|AAL48985.1|  200|Drosophila melanogaster RE39606p
           protein.
          Length = 200

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -3

Query: 519 ACXAMNGTEMLGATLKVEISR 457
           AC  +NG+E+LG+ L+VEIS+
Sbjct: 62  ACDILNGSELLGSQLRVEISK 82


>AE014134-1804|AAF52890.1|  200|Drosophila melanogaster CG5655-PA
           protein.
          Length = 200

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -3

Query: 519 ACXAMNGTEMLGATLKVEISR 457
           AC  +NG+E+LG+ L+VEIS+
Sbjct: 62  ACDILNGSELLGSQLRVEISK 82


>AE014296-3795|EAA46074.2|  307|Drosophila melanogaster CG12460-PA
           protein.
          Length = 307

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 428 SEVGAAVTSGVVVHSEVREEAGLTTHTVAAAAGRTI 321
           SEV   VT  V V  EVR  + +TT TV   A R+I
Sbjct: 158 SEVAMLVTIKVAVSPEVRRTSSVTTETVVVHALRSI 193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,140,036
Number of Sequences: 53049
Number of extensions: 276501
Number of successful extensions: 648
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)