Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334D01f
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.21 
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   3.4  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              21   7.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   7.9  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 247 ITGTCPTISPSIILPPR 197
           +TGT PT+ P   LPPR
Sbjct: 476 LTGTYPTLLPQWCLPPR 492



 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 195  GLGGKIMLGLIVGQVPVMLQSEDWKR 272
            G+GG    G++  Q P+M     +KR
Sbjct: 969  GMGGCQPGGVVQSQQPIMTDPSPFKR 994


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +3

Query: 9   ETAPAMVRKQ-VPNAVSMLTPLVLEMMCELDEEPDWTIXXXXXXXXXXXXYVAAESALDR 185
           +T  A++R   VP+++++++  +    C L   PDW+             Y  A    DR
Sbjct: 79  KTFLAVIRYDGVPSSLNVISEKIGNGGCLLQPYPDWSWANYKDCSGIVSAYKIAIDKFDR 138

Query: 186 M 188
           +
Sbjct: 139 L 139


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 247 ITGTCPTISPSIILPPR 197
           + G C  +SP I + PR
Sbjct: 28  LLGNCVRVSPVITIEPR 44


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -1

Query: 65  SEHAHGIGHLFTHH 24
           ++ A  + HL THH
Sbjct: 755 AKKARSVNHLLTHH 768


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -3

Query: 147 HYRHQQCCPVWSSQALHQAHTSSQVQ 70
           HY+H    PV++ Q   +  T   +Q
Sbjct: 7   HYQHYHITPVFTKQKKVKEDTELNLQ 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,132
Number of Sequences: 438
Number of extensions: 2474
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)