Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C12f
         (358 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    81   7e-17
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   0.49 
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    26   1.5  
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    26   2.0  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    25   2.6  
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    25   3.5  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    25   3.5  
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ...    24   6.1  
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p...    24   8.0  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    24   8.0  
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    24   8.0  
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    24   8.0  

>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 80.6 bits (190), Expect = 7e-17
 Identities = 32/80 (40%), Positives = 57/80 (71%)
 Frame = +1

Query: 22  KQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQ 201
           KQ QY P+A+EEQV +IYCGV+G+LDK+   ++  FE +F  ++++S   ++  I K+G 
Sbjct: 457 KQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVEFEHKFIPYLRSSGAEIMEAIRKEGV 516

Query: 202 ITPESDASLKKIVTDFLATF 261
           ++  ++ SLK ++ +FL++F
Sbjct: 517 LSKTTEDSLKAVIKEFLSSF 536


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +1

Query: 97   DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
            DK+DP    AF+K  T ++ TS       + KD   T  S   L  I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
 Frame = +1

Query: 94  LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 243
           L++LDP KIT  + E    I +        QG  S++ K  +  P+  A     VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 180  GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 46
            G+   + S+ +  +FLL   DF G +L+  T     +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 90  SPRQAGPLQNHCLREGIHSTHQN*PPGSS 176
           SPRQA P ++  L  G++S   + PP S+
Sbjct: 301 SPRQARPRRSVSLATGLNSPSVSKPPSSA 329


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -2

Query: 123 SDFGGVQLVEVTADTAVNDGDLFLNSHGHILSLLALCRIR 4
           S FG V   E+  D + +  +L  N H +I     LC +R
Sbjct: 152 SAFGNVAGPELARDLSNDIAELCSNHHNYISKKAVLCALR 191


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 60  LFLNSHGHILSLLALCRIRH 1
           L  N+H H+L +L  C+  H
Sbjct: 410 LLENTHSHVLPILVACQTNH 429


>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 571

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 106 DPSKITAFEKEFTQHIKT 159
           DPS  TA +++F +H KT
Sbjct: 366 DPSISTALKEDFREHFKT 383


>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 240 DDLLQGGVRLGGDLTVFGD 184
           D LLQGGV  G    +FG+
Sbjct: 132 DTLLQGGVETGSITELFGE 150


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +1

Query: 94  LDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQI 204
           LDKL P K T     F Q    SH+G LST    G++
Sbjct: 549 LDKL-PEKTTNI---FIQFYSNSHRGDLSTSESKGEL 581


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 278 VYCDWVKVARKSVTIFFK 225
           + CDW K+  K V + FK
Sbjct: 516 IECDWSKIIPKEVLLTFK 533


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 156 N*PPGSSLHDRQRRSDHPR 212
           N PP +  HD  +R++H R
Sbjct: 12  NNPPAARTHDHSQRNNHAR 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,453,148
Number of Sequences: 5004
Number of extensions: 25435
Number of successful extensions: 98
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)