Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C12f
         (358 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0651 + 4711369-4712431,4713069-4713763                           31   0.20 
02_02_0741 + 13590883-13591582,13591955-13592250                       28   1.9  
06_01_0068 - 572964-573323                                             27   3.3  
06_03_0444 + 20864183-20864436,20864831-20865818                       27   5.7  
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998...    27   5.7  
01_01_0686 - 5260189-5261898                                           27   5.7  
11_06_0064 + 19733643-19734056                                         26   7.6  
07_03_1208 - 24896905-24896931,24897330-24897341,24898058-248983...    26   7.6  

>06_01_0651 + 4711369-4712431,4713069-4713763
          Length = 585

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +1

Query: 7   NSAQGKQGQYVPMAIEEQVAIIY-CGVRGHLDKLDPSKITAFEKE 138
           N+A   +GQ V + +   +A  Y CGV GH D L       F +E
Sbjct: 370 NTAGAAKGQAVALRVSADMAAAYRCGVEGHQDSLYAHSFRQFYRE 414


>02_02_0741 + 13590883-13591582,13591955-13592250
          Length = 331

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 76  CGVRGHLDKLDPSKITAF--EKEFTQHIKTSHQGLLSTIAKDGQITPESDAS 225
           CG +GH  +  P K+ A   EK+  Q + ++     ST  KDG + P S A+
Sbjct: 96  CGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGAN 147


>06_01_0068 - 572964-573323
          Length = 119

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 54  GTGRHHLLRCPRSPRQA 104
           G GRHHL+ CP  P  A
Sbjct: 79  GDGRHHLVPCPPPPSSA 95


>06_03_0444 + 20864183-20864436,20864831-20865818
          Length = 413

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 167 WWLVLMC*VNSFSKAVILEGSSLSR 93
           WWL ++  V SFS A I  G SL++
Sbjct: 130 WWLSIIAAVMSFSYAAIAVGLSLAQ 154


>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
            34700123-34700218,34700322-34700438,34700520-34700676,
            34700770-34700867,34700940-34701098,34701169-34701339,
            34701402-34701479,34701548-34701667,34701968-34702085,
            34702216-34702346,34702452-34702528,34702858-34702969,
            34703057-34703239,34703416-34703517,34703617-34703718,
            34703817-34703912,34704481-34704558,34704652-34704744,
            34704817-34704938,34705035-34705116,34705204-34705278,
            34705385-34705645,34705730-34705854,34705956-34706031,
            34706128-34706277,34706359-34706454,34706707-34706814,
            34706956-34707056,34707727-34707814,34707894-34708006,
            34708278-34708383,34709143-34709247,34709356-34709427,
            34709931-34709971,34710067-34710175,34710252-34710317,
            34710404-34710540,34710788-34710890,34711416-34711535,
            34711707-34711820,34711923-34712008,34712088-34712170,
            34713283-34713347,34713444-34713621,34713697-34713776,
            34714926-34715049,34715140-34715245,34715399-34715561
          Length = 1966

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 139  FTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLAT 258
            F  H  T   GLL  +     +T E D  ++K   + LAT
Sbjct: 1296 FMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLAT 1335


>01_01_0686 - 5260189-5261898
          Length = 569

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3

Query: 75  LRCPRSPRQAGPLQNHCLREGIHSTH 152
           LR   SPR A  +  H L  G+H+ H
Sbjct: 18  LRAAASPRVASAVHAHALHLGLHAQH 43


>11_06_0064 + 19733643-19734056
          Length = 137

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +3

Query: 42  HGY*GTGRHHLLRCPRSPRQAGPLQNHCLREGIHSTHQN*PPGSSLHDR 188
           HG    G H  LR  RS     PLQ + LR   H+      P +  H R
Sbjct: 61  HGSSTAGGHGALRRKRSSAARRPLQVYYLRRLAHTLRLAPSPAALAHRR 109


>07_03_1208 -
           24896905-24896931,24897330-24897341,24898058-24898333,
           24898410-24898466,24898561-24898638,24899112-24899198,
           24899815-24899904,24900012-24900218
          Length = 277

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +3

Query: 90  SPRQAGPLQNHCLREGIHSTHQN*PPGSSLHDRQRRSDHPRV 215
           +P +   L++HC +    S  ++   G+   D   RS+HP +
Sbjct: 39  APARRIQLRSHCTKSPTESEPEHEDDGADDEDAAARSEHPAI 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,447,305
Number of Sequences: 37544
Number of extensions: 197637
Number of successful extensions: 511
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)