Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334C12f
(358 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 118 1e-27
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 118 1e-27
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 118 1e-27
AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical ... 27 5.1
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr... 26 6.7
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr... 26 6.7
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 26 8.9
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 26 8.9
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 26 8.9
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 26 8.9
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 118 bits (284), Expect = 1e-27
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +1
Query: 22 KQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQ 201
KQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQ
Sbjct: 430 KQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQ 489
Query: 202 ITPESDASLKKIVTDFLATF 261
I+P++DA LK +V +FLATF
Sbjct: 490 ISPQTDAQLKDVVVNFLATF 509
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 118 bits (284), Expect = 1e-27
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +1
Query: 22 KQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQ 201
KQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQ
Sbjct: 422 KQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQ 481
Query: 202 ITPESDASLKKIVTDFLATF 261
I+P++DA LK +V +FLATF
Sbjct: 482 ISPQTDAQLKDVVVNFLATF 501
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 118 bits (284), Expect = 1e-27
Identities = 52/80 (65%), Positives = 66/80 (82%)
Frame = +1
Query: 22 KQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQ 201
KQGQYVPM IEEQV +IY GV+G+LDK+DPS IT FEKEF H+++S Q LL TI ++GQ
Sbjct: 457 KQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITKFEKEFLAHLRSSQQALLKTIREEGQ 516
Query: 202 ITPESDASLKKIVTDFLATF 261
I+P++DA LK +V +FLATF
Sbjct: 517 ISPQTDAQLKDVVVNFLATF 536
>AF063007-2|AAC16433.1| 583|Caenorhabditis elegans Hypothetical
protein R119.7 protein.
Length = 583
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 116 KSLPSRRNSLNTSKLATRVFSPRSPKTV 199
K L + SL+T+++A+ FSP PKT+
Sbjct: 427 KRLRAESGSLSTAQVASPEFSPIKPKTM 454
>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical protein
F45H11.4 protein.
Length = 1243
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 175 LSTIAKDGQITPESDASLKKIVTDFLATF 261
L TIA+ + P+S A++ K TDF F
Sbjct: 1215 LPTIARPIPVPPDSTATVTKFATDFKQIF 1243
>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical protein
F45H11.4 protein.
Length = 1243
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 175 LSTIAKDGQITPESDASLKKIVTDFLATF 261
L TIA+ + P+S A++ K TDF F
Sbjct: 1215 LPTIARPIPVPPDSTATVTKFATDFKQIF 1243
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 177 LHDRQRRSDHPRV*RLLEEDRHRLPSYF 260
LH+R + DH RV L + R+ P YF
Sbjct: 4354 LHNRSLKQDHARVALLDSDARYWDPEYF 4381
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 1 VPNSAQGKQGQYVPMAIEEQVAI 69
+PN+ G QG Y+ + E VAI
Sbjct: 3062 IPNTCVGDQGTYLALTSSESVAI 3084
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 7831 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 7881
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 8271 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 8321
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 1 VPNSAQGKQGQYVPMAIEEQVAI 69
+PN+ G QG Y+ + E VAI
Sbjct: 3062 IPNTCVGDQGTYLALTSSESVAI 3084
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 7851 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 7901
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 8291 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 8341
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 1 VPNSAQGKQGQYVPMAIEEQVAI 69
+PN+ G QG Y+ + E VAI
Sbjct: 3062 IPNTCVGDQGTYLALTSSESVAI 3084
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 7851 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 7901
Score = 25.8 bits (54), Expect = 8.9
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +1
Query: 97 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 252
DKL +KE +K G L KD ++ E+DA LKK D L
Sbjct: 8291 DKLKQEADGKLKKEKDNKLKQEADGKLKK-EKDNKLKQEADAKLKKEKDDKL 8341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,276,674
Number of Sequences: 27780
Number of extensions: 152126
Number of successful extensions: 570
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -