Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C08f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0597 - 24198112-24198462,24199249-24199389,24200322-242005...    31   0.74 
10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111     28   4.0  
02_02_0027 + 6194110-6194541                                           28   5.2  
12_02_0078 + 13290432-13290924,13290998-13291201,13291290-132920...    27   6.9  
03_01_0133 - 1057679-1057880,1058112-1058377                           27   6.9  
05_07_0232 - 28554788-28554956,28555039-28555111,28555560-285556...    27   9.1  
01_06_0114 + 26576554-26576649,26577181-26577247,26577864-265781...    27   9.1  

>02_04_0597 -
           24198112-24198462,24199249-24199389,24200322-24200537,
           24200626-24201561,24201655-24201816,24202026-24202304,
           24202399-24203171,24206142-24207363
          Length = 1359

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -3

Query: 210 SLRALACTSSLKWNASMSHVFSCVQPAPSNFKTLSRQKSH*F 85
           S  A   +SS KW   +S+  S   P+P   K+L+R   H F
Sbjct: 104 SSSATTTSSSSKWECFLSYRLSVAHPSPDPSKSLARDSWHRF 145


>10_08_0313 - 16677849-16679060,16679158-16679244,16679749-16680111
          Length = 553

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 219 LCRSLRALACTSSLKWNASMSHVFSCVQPAPSNF 118
           LC +L   + TS +K+  SM H F C  PAP N+
Sbjct: 133 LCSNL-PFSTTSHVKY-CSMCHCFVCDTPAPCNY 164


>02_02_0027 + 6194110-6194541
          Length = 143

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 242 KRGGRLCLFVARCALSLALQASNGTPQ 162
           K G     F+A CAL+LAL AS+  P+
Sbjct: 23  KLGAAAAAFLAVCALALALCASHAAPE 49


>12_02_0078 +
           13290432-13290924,13290998-13291201,13291290-13292024,
           13292108-13292499
          Length = 607

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 201 ALACTSSLKWNASMSHVFSCVQPAPSNFKTLSRQKSH*FHTV--SYTRLRYDYGA 43
           A AC SS+ W  ++  V + VQP  S  +     K+     V   Y  L+ +YG+
Sbjct: 79  AHACLSSISWWENLEAVVNSVQPMYSFLRFADEDKNPNLSEVLLRYQLLKMEYGS 133


>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 418 MVSFFNYRNYRCYKQLTPHSLFTELH 341
           +V++F+ RN+ C     PH   T++H
Sbjct: 126 LVNYFSSRNFACECDFLPHYTSTQIH 151


>05_07_0232 -
           28554788-28554956,28555039-28555111,28555560-28555641,
           28556212-28556302,28556379-28556455,28557084-28557125,
           28557629-28557759,28558015-28558095,28558258-28558346,
           28558507-28558590,28558687-28558740,28559362-28559426
          Length = 345

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 222 PLCRSLRALACTSSLKWNASMSHVFSCVQPAPSNF 118
           PLC S+  +  T    WN ++S+      P   +F
Sbjct: 123 PLCESMHPVPLTDLKNWNCAISYGMGSTSPLSPSF 157


>01_06_0114 +
           26576554-26576649,26577181-26577247,26577864-26578141,
           26578220-26578381,26578791-26578949,26579045-26579161
          Length = 292

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 318 LLLYSSCPRGCISHSSRRETDVERCQTRRPIVPLCRSLRA 199
           LL +    +GCI      +  V R + RR +V   RSL A
Sbjct: 195 LLPHGDLCKGCICQDQAPDAKVPRIRNRRKLVVYIRSLEA 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,672
Number of Sequences: 37544
Number of extensions: 257228
Number of successful extensions: 574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)