Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C08f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    29   2.7  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    29   2.7  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    29   2.7  
AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical...    27   8.1  

>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 234 SAFGSVRHLSLSYLSERCIRVDSC 305
           S FGS +H S+   S  C+ VD C
Sbjct: 103 SIFGSAKHSSIGVFSITCLMVDKC 126


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 234 SAFGSVRHLSLSYLSERCIRVDSC 305
           S FGS +H S+   S  C+ VD C
Sbjct: 103 SIFGSAKHSSIGVFSITCLMVDKC 126


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 99    FDVTTS*NSMEPAARTKKHDSLRRSI*GLKCKRERATSDKEAQ 227
             FD +T   S+E     K  DS + SI G+K K  + +   EAQ
Sbjct: 11258 FDSSTKSESIEDVIPDKNRDSDKMSITGIKKKMSQKSESAEAQ 11300


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +3

Query: 99    FDVTTS*NSMEPAARTKKHDSLRRSI*GLKCKRERATSDKEAQ 227
             FD +T   S+E     K  DS + SI G+K K  + +   EAQ
Sbjct: 11258 FDSSTKSESIEDVIPDKNRDSDKMSITGIKKKMSQKSESAEAQ 11300


>AC024771-10|AAK70664.1|  433|Caenorhabditis elegans Hypothetical
           protein Y40B10A.9 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 261 TDVERCQTRRPIVPLCRSLRALACTSSLKWNASMSHVFSCVQPAPSNFKTLSR 103
           TD+E+C  R+  +P    +  L   +S+K+ A +  + S     PSNF  L +
Sbjct: 73  TDLEKCGPRKFAIPAINDVHHLQ-ANSIKYYAELGQLSSY---CPSNFTLLQK 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,090,286
Number of Sequences: 27780
Number of extensions: 231722
Number of successful extensions: 472
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)