Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334C02f
(415 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 112 2e-26
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.22
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 28 0.66
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 26 2.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 2.7
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 25 3.5
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 24 8.1
SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces ... 24 8.1
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 24 8.1
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 112 bits (270), Expect = 2e-26
Identities = 48/105 (45%), Positives = 78/105 (74%)
Frame = +1
Query: 4 AEFGTRLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITA 183
A+FG+ LDA T+ L+RG+RLTELLKQ QY P+A+EEQV +IYCGV+G+LDK+ ++
Sbjct: 432 AQFGSDLDAGTRATLDRGLRLTELLKQPQYSPLAVEEQVPLIYCGVKGYLDKIPVDRVVE 491
Query: 184 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 318
FE +F ++++S ++ I K+G ++ ++ SLK ++ +FL++F
Sbjct: 492 FEHKFIPYLRSSGAEIMEAIRKEGVLSKTTEDSLKAVIKEFLSSF 536
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.5 bits (63), Expect = 0.22
Identities = 19/65 (29%), Positives = 35/65 (53%)
Frame = -3
Query: 197 NSFSKAVILEGSSLSR*PRTPQ*MMATCSSIAMGTYCPCLRSSVRRIPLLSSCCVAASNL 18
+S S ++ + LS + +M + SSI G+ L SS+ IP+ SS +S++
Sbjct: 612 SSISSSISSSSTILSSPTPSTSSLMISSSSIISGS-SSILSSSISTIPISSSLSTYSSSV 670
Query: 17 VPNSA 3
+P+S+
Sbjct: 671 IPSSS 675
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 0.66
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +1
Query: 154 DKLDPSKITAFEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFL 309
DK+DP AF+K T ++ TS + KD T S L I+ +FL
Sbjct: 1424 DKVDPVFKDAFQKLITPNLLTSQ--FFDVLTKDALYTNGSCWELSVIILNFL 1473
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +1
Query: 151 LDKLDPSKITAFEKEFTQHIKTS------HQGLLSTIAKDGQITPESDASLKKIVT 300
L++LDP KIT + E I + QG S++ K + P+ A VT
Sbjct: 534 LEELDPPKITTIDGESPSSISSRLPSSNLEQGSSSSVTKSPESMPDPSAKASSPVT 589
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 2.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 237 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNS 103
G+ + S+ + +FLL DF G +L+ T +D +L +NS
Sbjct: 1379 GDLKHMTSYLIRQDFLLN-EDFVGTELIGTTDSYDYSDENLIINS 1422
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 147 SPRQAGPLQNHCLREGIHSTHQN*PPGSS 233
SPRQA P ++ L G++S + PP S+
Sbjct: 301 SPRQARPRRSVSLATGLNSPSVSKPPSSA 329
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 24.2 bits (50), Expect = 8.1
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = -2
Query: 237 GEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTH 58
G K V ++L+ +L ++ +LV ++ + D N+ H++ LE LS +
Sbjct: 290 GHKGTVEEVELLNSYLRSKAEVA--KLVGKSSFADLQLIDKMANAPKHVVEFLENLSLKN 347
Query: 57 SSV 49
SSV
Sbjct: 348 SSV 350
>SPCC1450.14c |ero12||ER oxidoreductin Ero1b|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 571
Score = 24.2 bits (50), Expect = 8.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 163 DPSKITAFEKEFTQHIKT 216
DPS TA +++F +H KT
Sbjct: 366 DPSISTALKEDFREHFKT 383
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 24.2 bits (50), Expect = 8.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 129 NDGDLFLNSHGHILSLLEELSKTHSSVEQLLCS 31
+D +L H H L +ELS THSS+ L S
Sbjct: 75 SDKSDYLLDHAHSL---QELSTTHSSLSSTLTS 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,762
Number of Sequences: 5004
Number of extensions: 29806
Number of successful extensions: 119
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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