Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334C02f
(415 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0651 + 4711369-4712431,4713069-4713763 28 2.6
02_02_0741 + 13590883-13591582,13591955-13592250 28 2.6
11_02_0111 + 8396304-8396378,8396697-8397113,8397220-8397483,839... 28 3.4
05_07_0101 - 27690927-27691208,27691695-27692474 28 3.4
06_01_0068 - 572964-573323 27 4.5
01_06_1261 - 35826513-35828941,35829201-35829294 27 4.5
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 27 5.9
06_03_0444 + 20864183-20864436,20864831-20865818 27 7.8
01_06_1127 - 34699119-34699360,34699446-34699689,34699773-346998... 27 7.8
01_01_0686 - 5260189-5261898 27 7.8
>06_01_0651 + 4711369-4712431,4713069-4713763
Length = 585
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 82 QGQYVPMAIEEQVAIIY-CGVRGHLDKLDPSKITAFEKE 195
+GQ V + + +A Y CGV GH D L F +E
Sbjct: 376 KGQAVALRVSADMAAAYRCGVEGHQDSLYAHSFRQFYRE 414
>02_02_0741 + 13590883-13591582,13591955-13592250
Length = 331
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 133 CGVRGHLDKLDPSKITAF--EKEFTQHIKTSHQGLLSTIAKDGQITPESDAS 282
CG +GH + P K+ A EK+ Q + ++ ST KDG + P S A+
Sbjct: 96 CGEQGHYVRNCPWKVFARSPEKDEKQCLGSNQAPSQSTDKKDGTLQPNSGAN 147
>11_02_0111 +
8396304-8396378,8396697-8397113,8397220-8397483,
8398237-8398608
Length = 375
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 120 DLFLNSHGHILSLLEELSKTHSSVEQLLCSGIQPRAEF 7
DL N HI LE+ + S++ C G+QP A F
Sbjct: 97 DLPGNDFNHIFQSLEQFEQ--STIHDCACKGLQPPAHF 132
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.9 bits (59), Expect = 3.4
Identities = 22/93 (23%), Positives = 39/93 (41%)
Frame = +1
Query: 70 ELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITAFEKEFTQHIKTSHQGLLSTIAK 249
E+L+ Y P + CGV G + DP I+ T ++ +G S+ A+
Sbjct: 181 EMLRVNHYPPCLLPPGRDRDECGVTGFGEHTDPQIISVLRSNCTAGLQILLRGDYSSPAR 240
Query: 250 DGQITPESDASLKKIVTDFLATFTQSQ*TSLRN 348
+ P+ D+ V D L T + S+++
Sbjct: 241 WVPVPPDPDSFFVN-VGDSLQVLTNGRFRSVKH 272
>06_01_0068 - 572964-573323
Length = 119
Score = 27.5 bits (58), Expect = 4.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 111 GTGRHHLLRCPRSPRQA 161
G GRHHL+ CP P A
Sbjct: 79 GDGRHHLVPCPPPPSSA 95
>01_06_1261 - 35826513-35828941,35829201-35829294
Length = 840
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/39 (23%), Positives = 24/39 (61%)
Frame = -2
Query: 165 VQLVEVTADTAVNDGDLFLNSHGHILSLLEELSKTHSSV 49
++L+++ ADT DL+ S +++ +EE +++ ++
Sbjct: 41 IKLIDIEADTFARKADLYFKSRPDLINHVEETYRSYQAL 79
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +2
Query: 29 PLHSSCSTEECVLLSSSSKDNM---CPWLLRN 115
PL SS S E+ ++ S+S + CPWLLR+
Sbjct: 5 PLASSSSREKTMMSSNSLFQRLAKWCPWLLRD 36
>06_03_0444 + 20864183-20864436,20864831-20865818
Length = 413
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 224 WWLVLMC*VNSFSKAVILEGSSLSR 150
WWL ++ V SFS A I G SL++
Sbjct: 130 WWLSIIAAVMSFSYAAIAVGLSLAQ 154
>01_06_1127 - 34699119-34699360,34699446-34699689,34699773-34699844,
34700123-34700218,34700322-34700438,34700520-34700676,
34700770-34700867,34700940-34701098,34701169-34701339,
34701402-34701479,34701548-34701667,34701968-34702085,
34702216-34702346,34702452-34702528,34702858-34702969,
34703057-34703239,34703416-34703517,34703617-34703718,
34703817-34703912,34704481-34704558,34704652-34704744,
34704817-34704938,34705035-34705116,34705204-34705278,
34705385-34705645,34705730-34705854,34705956-34706031,
34706128-34706277,34706359-34706454,34706707-34706814,
34706956-34707056,34707727-34707814,34707894-34708006,
34708278-34708383,34709143-34709247,34709356-34709427,
34709931-34709971,34710067-34710175,34710252-34710317,
34710404-34710540,34710788-34710890,34711416-34711535,
34711707-34711820,34711923-34712008,34712088-34712170,
34713283-34713347,34713444-34713621,34713697-34713776,
34714926-34715049,34715140-34715245,34715399-34715561
Length = 1966
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 196 FTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLAT 315
F H T GLL + +T E D ++K + LAT
Sbjct: 1296 FMDHHGTEVSGLLKNLPSVAALTAERDGEIRKAALNTLAT 1335
>01_01_0686 - 5260189-5261898
Length = 569
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 132 LRCPRSPRQAGPLQNHCLREGIHSTH 209
LR SPR A + H L G+H+ H
Sbjct: 18 LRAAASPRVASAVHAHALHLGLHAQH 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,937,344
Number of Sequences: 37544
Number of extensions: 231563
Number of successful extensions: 689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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