Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C02f
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...   158   1e-39
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...   158   1e-39
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...   158   1e-39
U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fus...    31   0.44 
EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell f...    31   0.44 
Z92825-1|CAB07313.1|  415|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical ...    27   7.1  
Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trn...    26   9.4  
AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trn...    26   9.4  

>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score =  158 bits (384), Expect = 1e-39
 Identities = 72/105 (68%), Positives = 90/105 (85%)
 Frame = +1

Query: 4   AEFGTRLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITA 183
           A+FG+ LDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT 
Sbjct: 405 AQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITK 464

Query: 184 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 318
           FEKEF  H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 465 FEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 509


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score =  158 bits (384), Expect = 1e-39
 Identities = 72/105 (68%), Positives = 90/105 (85%)
 Frame = +1

Query: 4   AEFGTRLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITA 183
           A+FG+ LDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT 
Sbjct: 397 AQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITK 456

Query: 184 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 318
           FEKEF  H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 457 FEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 501


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score =  158 bits (384), Expect = 1e-39
 Identities = 72/105 (68%), Positives = 90/105 (85%)
 Frame = +1

Query: 4   AEFGTRLDAATQQLLNRGMRLTELLKQGQYVPMAIEEQVAIIYCGVRGHLDKLDPSKITA 183
           A+FG+ LDA+TQQLLNRG+RLTELLKQGQYVPM IEEQV +IY GV+G+LDK+DPS IT 
Sbjct: 432 AQFGSDLDASTQQLLNRGVRLTELLKQGQYVPMGIEEQVGVIYAGVKGYLDKVDPSAITK 491

Query: 184 FEKEFTQHIKTSHQGLLSTIAKDGQITPESDASLKKIVTDFLATF 318
           FEKEF  H+++S Q LL TI ++GQI+P++DA LK +V +FLATF
Sbjct: 492 FEKEFLAHLRSSQQALLKTIREEGQISPQTDAQLKDVVVNFLATF 536


>U28928-1|AAA68334.3|  589|Caenorhabditis elegans Anchor cell fusion
           failure protein1 protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 5   PNSARGWMPLHSSCSTEECVLLSSSSKDNMCPWLL 109
           P   + W   HS CS  EC  L S   D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522


>EF205023-1|ABP04049.1|  589|Caenorhabditis elegans anchor cell
           fusion failure-1 protein.
          Length = 589

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 5   PNSARGWMPLHSSCSTEECVLLSSSSKDNMCPWLL 109
           P   + W   HS CS  EC  L S   D + PW++
Sbjct: 489 PRQEQSWSKGHSPCSQAECNSLKSGVSD-LFPWIM 522


>Z92825-1|CAB07313.1|  415|Caenorhabditis elegans Hypothetical
           protein C13C4.1 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -2

Query: 132 VNDGDLFLNSHGHILSLLEELSKTHSSVEQLLCSGI 25
           +NDG +F N H  +  +L +L K  + +E++  +G+
Sbjct: 129 LNDGTVFFNVHDRLNQILGKLIKIETKLEKVHDNGM 164


>Z92781-5|CAB07179.2| 1391|Caenorhabditis elegans Hypothetical protein
            F09C3.1 protein.
          Length = 1391

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -2

Query: 243  DRGEKTLVASFDVLSEFLLEGSDFGGVQLVEVTADTAVNDGDLFLNSHGHILSLLEELSK 64
            D+  +T++         + E S+   VQL++  AD A +DG + L  H     +L + ++
Sbjct: 1079 DKHLQTVIECLRKNKSTITEESENQLVQLIDSIADVATSDGVVMLQLHPSPNEMLPDGTQ 1138

Query: 63   TH 58
             H
Sbjct: 1139 AH 1140


>AF063007-2|AAC16433.1|  583|Caenorhabditis elegans Hypothetical
           protein R119.7 protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +2

Query: 173 KSLPSRRNSLNTSKLATRVFSPRSPKTV 256
           K L +   SL+T+++A+  FSP  PKT+
Sbjct: 427 KRLRAESGSLSTAQVASPEFSPIKPKTM 454


>Z78420-6|CAB01711.2| 1243|Caenorhabditis elegans Hypothetical protein
            F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 232  LSTIAKDGQITPESDASLKKIVTDFLATF 318
            L TIA+   + P+S A++ K  TDF   F
Sbjct: 1215 LPTIARPIPVPPDSTATVTKFATDFKQIF 1243


>Z78418-6|CAB01699.2| 1243|Caenorhabditis elegans Hypothetical protein
            F45H11.4 protein.
          Length = 1243

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 232  LSTIAKDGQITPESDASLKKIVTDFLATF 318
            L TIA+   + P+S A++ K  TDF   F
Sbjct: 1215 LPTIARPIPVPPDSTATVTKFATDFKQIF 1243


>AF077541-9|AAC64633.1|  909|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform a protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 99  GHILSLLEELSKTHSSVEQLLCSGIQPRA 13
           G  L L+EE  K  S V + LC  +  R+
Sbjct: 649 GKELKLMEEFGKLKSEVHEALCDSVDTRS 677


>AF077541-8|AAK68426.1|  908|Caenorhabditis elegans Cysteinyl trna
           synthetase protein1, isoform b protein.
          Length = 908

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 99  GHILSLLEELSKTHSSVEQLLCSGIQPRA 13
           G  L L+EE  K  S V + LC  +  R+
Sbjct: 648 GKELKLMEEFGKLKSEVHEALCDSVDTRS 676


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,432,976
Number of Sequences: 27780
Number of extensions: 177138
Number of successful extensions: 687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)