Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C01f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit ...    27   1.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.2  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.9  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   5.2  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   6.8  
SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces pombe...    25   6.8  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   9.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   9.0  

>SPAC6F6.10c |arc2|arc34|ARP2/3 actin-organizing complex subunit
           Arc34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 278 LKTHTKFTCEFVKQRLQNRTADVGSLAERGKPSISTD 388
           L  H K +  ++ QR++ R AD   +  R KP +  +
Sbjct: 269 LHFHIKASKAYMHQRMRKRVADFQKVLNRAKPDVELE 305


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 89  LYRSDYFYWYIPTHVTQKV 145
           L R DY YW+ P +V Q++
Sbjct: 568 LVRRDYRYWWTPVYVNQEL 586


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 451 QKYVLMLRSIISAYDIYKAFKIGRDGRFASLC 356
           ++Y+L  R++ SA DI       R  +FASLC
Sbjct: 160 RQYLLFARALSSALDIIPNKNSSRRLQFASLC 191


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 71  ADRHY-ILYRSDYFYWYIPTHVTQKVWRLSI*NLDFQSLFFS 193
           A+R++  +Y  +   + +P ++TQK W L   +   ++L FS
Sbjct: 559 AERNFQTIYHPNKIVYMLPLNITQKYWSLDSSSTAQRALTFS 600


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 494 SLKMLQNAYGGSNLSKIRAY 435
           +LK LQN+YG S+L +   Y
Sbjct: 116 ALKALQNSYGSSHLYRFTPY 135


>SPBC119.08 |pmk1|spm1|MAP kinase Pmk1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 422

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 338 ADVGSLAERGKPSISTDFERFIYVISTYY*SKHKHVFLINSIHR 469
           AD+ ++ + G+P     F+ FIY I        K++   N IHR
Sbjct: 109 ADLNAIIKSGQPLTDAHFQSFIYQILCGL----KYIHSANVIHR 148


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 401 IYVISTYY*SKHKHVFLINSI 463
           I+VIS +Y   H H F IN+I
Sbjct: 147 IFVISLFYSLFHAHPFRINTI 167


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 392  QNRSRWKVCLALLGYQRQPCDSV 324
            +NR  W V LA++  QR   D+V
Sbjct: 946  RNRGLWAVILAIMSLQRFTADTV 968


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,087,134
Number of Sequences: 5004
Number of extensions: 41568
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)