Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0061 + 31352703-31353037,31353145-31353274,31353708-313539...    28   4.0  
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842...    27   6.9  

>03_06_0061 +
           31352703-31353037,31353145-31353274,31353708-31353902,
           31354696-31354725,31355238-31355395,31355756-31355846,
           31355924-31355989,31356331-31356413,31356495-31356558,
           31356641-31356709,31356798-31356833
          Length = 418

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -1

Query: 506 RVRESLKMLQNAYGGSNLSKI 444
           +++  +K+LQN YGG N+ K+
Sbjct: 155 KIKREIKILQNLYGGPNIVKL 175


>05_03_0104 -
           8426374-8426542,8426656-8426828,8427020-8427103,
           8427110-8427205,8427530-8427616,8428639-8428767,
           8428922-8429098,8429185-8429295,8429642-8429761,
           8430767-8432427,8432485-8432867,8433707-8434470,
           8434532-8434813,8436158-8436493
          Length = 1523

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 430 RSIISAYDIYKAFKIGRDGRFASLC*ATNVSRAIL*ALFNKLAREFGVSFQIG 272
           R+ ++ YD     ++  D +FAS+  AT   R++L  L   L +E+G+   IG
Sbjct: 161 RAFLAVYD-----RLVPDPQFASMELATGAMRSLLPKLLQLLEKEYGLQTGIG 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,308,811
Number of Sequences: 37544
Number of extensions: 229148
Number of successful extensions: 467
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)