Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334C01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 266 QNANLKTHTKFTCEFVKQRLQNRTADVGSLAERGKPS-ISTDFERF 400
           Q  ++  HTK + +   +RL+N TAD   L    KPS I  D + F
Sbjct: 176 QKEDILNHTKNSEKMWNERLENITADFERLKSSSKPSGIRADQKMF 221


>Z49068-5|CAA88863.2|  707|Caenorhabditis elegans Hypothetical
           protein K01C8.5 protein.
          Length = 707

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +2

Query: 308 FVKQRLQNRTADVGSLAERGKPSISTDFERFIYVISTYY*SKHKHVFLINSIHRKHS 478
           F +Q  +    ++ S +ER  PS +   ++  + IST   SK K    ++SIHR+ S
Sbjct: 619 FFRQESKGNEMNIESFSER-TPSKNRTSQQMEFQISTSSISKTKTNASLDSIHRRKS 674


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,458,026
Number of Sequences: 27780
Number of extensions: 229700
Number of successful extensions: 441
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)