Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B10f
         (350 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   0.49 
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    24   6.0  
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |...    24   6.0  

>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.9 bits (59), Expect = 0.49
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 84  IRKGPNKVGFIGLLQPFSDAIKLFTK 161
           + KG   VGF G L PF D+I  F K
Sbjct: 587 VPKGFQLVGFYGTLGPFMDSIGFFIK 612


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 45  LTLLERKVLGYIQIRKGPNKVGFIG 119
           L++L+RK L  I +R G  K GF G
Sbjct: 46  LSVLQRKGLALINLRIGVVKTGFGG 70


>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 51  LLERKVLGYIQIRKGPN 101
           L+ER  + Y  +RKGPN
Sbjct: 163 LVERNKIMYFSLRKGPN 179


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,708
Number of Sequences: 5004
Number of extensions: 10621
Number of successful extensions: 29
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)