Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B10f
         (350 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0923 - 25972063-25972840,25973549-25973620,25973711-259737...    26   7.2  

>06_03_0923 -
           25972063-25972840,25973549-25973620,25973711-25973747,
           25973852-25973910,25974011-25974295,25974653-25974954,
           25974986-25975116,25975209-25975296
          Length = 583

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 285 LGILFFLCXTSLGVYIVIIAGW 350
           LG++F LC     VY ++I GW
Sbjct: 286 LGLVFSLCGLKSLVYTLVIFGW 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,929
Number of Sequences: 37544
Number of extensions: 48017
Number of successful extensions: 81
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)