Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B09f
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    37   7e-04
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    27   1.1  
SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual      25   2.4  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   4.3  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    24   7.5  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    23   9.8  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    23   9.8  

>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 37.1 bits (82), Expect = 7e-04
 Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = +2

Query: 101 WVREFAIRSSALAQQSTYSKRLKD*STVLNQRKTNKIR*SVVVEQSEIER*SFKKKYHRK 280
           ++R F  RSS  ++ S   K ++D      +R+T +   + V+EQ ++     K+  H  
Sbjct: 605 FIRSFTFRSSNNSRMSQVFKDIQDMKKAATKRETERKEFADVIEQDKLIEIKNKRPAHIN 664

Query: 281 DVIVRPKREIEK-PGY 325
           DV VRP  + ++ PG+
Sbjct: 665 DVYVRPAIDGKRLPGF 680


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 69  GSTAHNH-YANDGDKYYFCKIHF 4
           G ++H + + ND  ++Y+CK HF
Sbjct: 200 GFSSHTYKFVNDKGEFYYCKWHF 222


>SPBC19F8.04c |||nuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -1

Query: 327 QYPGFSISLLGLTITSFL*YFFLKLYRSISLCST 226
           QY   +I   GL  TS   +FFL+ +R IS  ST
Sbjct: 5   QYKEKAIIGTGLITTSIGGFFFLRRFRRISNAST 38


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +2

Query: 188 NQRKTNK-IR*SVVVEQS-EIER*SFKKKYHRKDVIV 292
           N+ +TN  IR  V +++   IE    K KYH KDVI+
Sbjct: 152 NEPETNSLIRMDVGIDECLHIEFEYSKNKYHLKDVII 188


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 194 FDSELSTSPLAFWSTSIAGPALMIESR 114
           ++   +T P  FW T IA   ++ ++R
Sbjct: 168 YNFSFNTDPFEFWITRIADDQVLFDTR 194


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -2

Query: 206 YSSSFDSELSTSPLAFWSTSIAG 138
           Y  +F++  S + + +W  +IAG
Sbjct: 381 YEGNFEASFSNASMPYWIQTIAG 403


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   ENVFYKNSIYRHHLHNDCEL 62
           + VFY  ++ R+ LH+ CE+
Sbjct: 176 DGVFYMVAVARNKLHSICEI 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,251,274
Number of Sequences: 5004
Number of extensions: 20474
Number of successful extensions: 49
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)