Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B09f
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine re...    31   0.29 
Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical pr...    28   1.5  

>AF024498-7|AAF39806.2|  279|Caenorhabditis elegans Serpentine
           receptor, class x protein104 protein.
          Length = 279

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = -1

Query: 309 ISLLGLTITSFL*YFFLKLYRS--ISLCSTTTL--YLILFVFL 193
           +S  G+ I  ++ YFFLKL ++    LCS+ T+   +ILF +L
Sbjct: 18  VSFCGILINFYMFYFFLKLQKTSFYVLCSSKTISNSIILFAYL 60


>Z81088-7|CAB03129.2|  337|Caenorhabditis elegans Hypothetical
           protein F53F1.7 protein.
          Length = 337

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = -1

Query: 324 YPGFSISLLGLTITSFL*YFFLKLYRSISLCSTTTLYLILFVFL*FRTVD*SF-SLLEYV 148
           YP ++ ++  + ++  +   FL L R     +    Y   FV   FR    +F ++LE +
Sbjct: 136 YPKYTYTMQAIQLSGAVASVFLLLPREYKYVNENGGYYSAFVNNEFRKPFFNFVAVLEIL 195

Query: 147 DCWASADDRIANSLTHTFKLFKKVPSGSTA 58
              A   + +   +T+ FKL KKV S  T+
Sbjct: 196 FVLAIVVNNLVTYITYRFKLKKKVLSRRTS 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,783,684
Number of Sequences: 27780
Number of extensions: 108847
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)