Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334B04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 27 1.7
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch... 27 2.2
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos... 26 3.0
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo... 26 3.0
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 5.2
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 6.8
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 25 6.8
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 9.0
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ... 25 9.0
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo... 25 9.0
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 289 NDLSHRQWLRSPAAGTSGTCLRNMPAPLHRLTQS*RC 179
+D+ + W+ PA G C N+P H + +S RC
Sbjct: 40 SDVCFQPWIHDPALWKQGLCDSNVPTQEHAV-KSLRC 75
>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 683
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 483 YGAVLVEADGGEMAHAARAWLLGLVRTTLKWSSAMLNRMQDILENTFLATQL 328
Y + ++E G A ++ AW+LG + SS +L+ M + + L QL
Sbjct: 433 YLSRVIEELGDPRARSSMAWILGEFSHVIPTSSKLLSEMISTMADEDLQIQL 484
>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 52 FALLTFWFQLAEFTDPPCLIDLECAECIPDNMPLVTSHRATNGTFRIASGDEVVLACYGG 231
F + +F AE+ D C + L+ IPD LV++ ++ + SG V A
Sbjct: 170 FKVRSFPINYAEYADDECQLALKKIRPIPDKY-LVSTRVLSDSRYLELSGAVVAFAPDAS 228
Query: 232 KFLMYPLQE 258
L++ L +
Sbjct: 229 SSLLFELAD 237
>SPBC4.03c |||COPII-coated vesicle component Sfb3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.2 bits (55), Expect = 3.0
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = +1
Query: 73 FQLAEFTDPPCLIDLECAECIPDNMPL-VTSHR---ATNGTFRIASGDEVVL 216
+ L + CL D E C+P NMPL V + R G F I +G + L
Sbjct: 734 YALHQLQPTDCLPDPENTGCLPINMPLCVRASRKFIEDGGAFLIVTGQKSYL 785
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 188 LKVPFVARCDVTKGMLSGMHS 126
L+VPF R + T LSG+HS
Sbjct: 146 LEVPFRKRSESTSSSLSGLHS 166
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 377 STECKTSSKTLSWQPSSSKWRNFASL 300
S+ K ++ LS P+SS W +F+SL
Sbjct: 428 SSFLKRQTEMLSHSPASSHWASFSSL 453
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +1
Query: 31 FNMTWISFALLTFWFQLAEFTDPPCLIDLECAE 129
F W++ + W + TD P L D EC +
Sbjct: 204 FTYGWLNGIIWKSWKKPITLTDVPALPDTECTQ 236
>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 3/23 (13%)
Frame = +1
Query: 418 QEPG---SRSVRHLATVCFDEDR 477
QEPG S+S +H VC D+D+
Sbjct: 306 QEPGIKWSKSFQHFLCVCLDKDK 328
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = +3
Query: 159 VTSSYERHLQDCVR 200
VT+ ++HLQDC+R
Sbjct: 390 VTTQNKKHLQDCIR 403
>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 164 CDVTKGMLSGMHSAHSRSIR 105
C KG+ G+HS+ SR IR
Sbjct: 101 CSSDKGLCGGIHSSISRLIR 120
>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 443
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 175 NGTFRIASGDEVVLACYGGKFLMYPLQETLTTVC 276
N TF++ D +LA YG + PL T C
Sbjct: 335 NCTFQLYDDDMALLAGYGSRHYQVPLFPTNNIKC 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,137
Number of Sequences: 5004
Number of extensions: 43380
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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