Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334B04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0878 + 8624616-8624761,8625861-8626274,8626895-8626945,862... 32 0.24
08_02_0883 + 22229278-22230009 30 0.98
10_08_1061 - 22622805-22622961,22623262-22623441,22623482-226234... 30 1.3
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501... 30 1.3
01_06_0737 + 31592562-31592786,31593314-31593541,31593981-315940... 29 1.7
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 3.0
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 3.0
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 4.0
06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812 28 5.2
04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912 28 5.2
10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556 27 6.9
08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492 27 9.1
02_05_1240 + 35181983-35182615,35183025-35183856,35183936-351844... 27 9.1
02_05_1200 - 34922073-34922273,34922397-34922469,34922976-349230... 27 9.1
>08_01_0878 +
8624616-8624761,8625861-8626274,8626895-8626945,
8627179-8627215,8629535-8630059
Length = 390
Score = 32.3 bits (70), Expect = 0.24
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 363 LAFG*ALRSS---ISRSCVPDPGARLAQRAPSRHRLLRRGPRHSPSTPXH 503
LA G +L ++ ++R +P GA + A RHR RRGP SP H
Sbjct: 263 LALGSSLATASAWVARHVLPYAGANSSTPAHHRHRRRRRGPHRSPLRAPH 312
>08_02_0883 + 22229278-22230009
Length = 243
Score = 30.3 bits (65), Expect = 0.98
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 367 ARHPRKHFPGNPARANGATSHPCAL*NDLSHRQWLRSPAAGTSG--TCLRNMPA 212
ARH + FP N A A G++S +S RQ +PA TS T + ++P+
Sbjct: 111 ARHANRPFPANTAAAGGSSSS-----YSISQRQEAAAPARSTSNDDTAMSSVPS 159
>10_08_1061 -
22622805-22622961,22623262-22623441,22623482-22623489,
22623682-22623845,22623969-22624134
Length = 224
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 421 PGSGTHDLEMELRNAQPNARHPRKHFPGNPARANGAT 311
PG+ EMELR A + +HP H P +PA +G T
Sbjct: 185 PGAAMLIDEMELRQA--DEQHPGVHAPQSPAAVSGVT 219
>03_05_0923 +
28848925-28849272,28849636-28849869,28849965-28850131,
28850433-28850651,28850743-28850929,28851012-28851063,
28851158-28851387,28851619-28851717,28851835-28852565,
28853004-28853519,28854140-28854398
Length = 1013
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 383 QCSTECKTSSKTLSWQPSSSKWRNFASLRTLKRPISQTVVK 261
+C + SKT++ P S ++ ++L KRP+ TV K
Sbjct: 683 RCDKNAISDSKTVALHPLPSSFKGLSALLVDKRPVRATVTK 723
>01_06_0737 +
31592562-31592786,31593314-31593541,31593981-31594054,
31594595-31594754,31595979-31596098,31596185-31596293,
31597447-31597628
Length = 365
Score = 29.5 bits (63), Expect = 1.7
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 85 EFTDPPCLIDLECAECIPDNMPLVTSHRATNGTFRIASGDEVVLACYGGKFLMYPLQETL 264
E T P + A IP +T+ RA +GT RI+ G V++ GG + +Q +
Sbjct: 140 ELTSKPSTLSHVEASAIP--FAALTAWRALHGTARISEGQRVLVIGGGGAVGLAAVQLAV 197
Query: 265 TTVCEI 282
C +
Sbjct: 198 AAGCSV 203
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 3.0
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +3
Query: 411 PDPGARLAQRAPSRHRLLRRGPRHSPS 491
P PG RLAQ A S R L R P PS
Sbjct: 176 PRPGGRLAQAAASPFRCLYRPPPPRPS 202
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 227 P*HASTTSSPDAILKVPFVARCDVTKGMLSGMHSAHSR 114
P H S+ S P + +PF++ CD G++ G S+
Sbjct: 371 PNHDSSHSKPAFLALLPFLSFCDEANGLIHGASQGTSK 408
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +3
Query: 180 HLQDCVRR*SGAGMLRRQVPDVPAAGDLNHCL*DRS 287
HL+ CVRR S L V VP G + C DR+
Sbjct: 66 HLKQCVRRYSSFDFLTEVVNKVPDLGGADSCGDDRA 101
>06_03_0946 - 26208253-26209075,26209181-26209329,26209525-26209812
Length = 419
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 106 LIDLECAECIPDNMPLVTSHRATNGTFRIASGD 204
L+ + AE +P +MP + +H+ T GTF + D
Sbjct: 232 LLPPQDAEFLPADMPALLAHKLTLGTFVAVAAD 264
>04_04_0630 - 26719136-26719150,26720065-26720134,26720438-26721912
Length = 519
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 438 RAPSRHRLLRRGPRHSPSTPXHKRTQEP 521
R+ +RHR R G R +P P H++ P
Sbjct: 54 RSAARHRGRRHGTRRAPPPPRHRQLSLP 81
>10_01_0293 + 3039945-3040857,3042457-3042630,3043562-3044556
Length = 693
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -1
Query: 197 DAILKVPFVARCDVTKGMLSG---MHSAHSRSIRHG 99
DA + +P R D+ G MHS+ SR+IRHG
Sbjct: 506 DANIPLPLGLRLDIAIESAEGLRYMHSSTSRTIRHG 541
>08_01_0352 + 3102552-3105243,3105684-3105748,3105824-3106492
Length = 1141
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -3
Query: 417 GLVRTTLKWSSAMLNRMQDILENTFLATQLEQMAQLRILA 298
G+ + W S L ++ +L N L L M QLR LA
Sbjct: 671 GVQAPKVVWESMELQTLKGVLANLNLVENLGHMTQLRTLA 710
>02_05_1240 +
35181983-35182615,35183025-35183856,35183936-35184497,
35184581-35184722,35184832-35184939,35185055-35185267,
35185355-35185465,35185684-35185878,35186094-35186268,
35186379-35186413
Length = 1001
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +3
Query: 369 FG*ALRSSISRSCVPDPGARLAQRAPS 449
F A+ SSISRS PDP +L +R PS
Sbjct: 281 FASAVGSSISRSTTPDP--QLIRRTPS 305
>02_05_1200 -
34922073-34922273,34922397-34922469,34922976-34923019,
34923107-34923183,34923433-34923529,34923668-34924062,
34926577-34926620,34926702-34926770,34926856-34926956,
34927689-34927856,34927940-34928141,34928269-34928708,
34928786-34928884,34929123-34929263
Length = 716
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 489 KGYGAVLVEADGGEMAHAARAWLLGLVRTTLKWS 388
+G+ VLV A G + AA W G V+ L+W+
Sbjct: 9 RGFVDVLVLAGGRTSSGAAATWRSGDVKKALQWA 42
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,397,522
Number of Sequences: 37544
Number of extensions: 343550
Number of successful extensions: 1061
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -