Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical ...    29   1.5  
AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AF039569-1|AAB99999.1|  451|Caenorhabditis elegans aryl hydrocar...    27   6.2  
Z81038-7|CAB02764.1|  453|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical...    27   8.1  

>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -2

Query: 430 SLAPGSGTHDLEMELRNAQPNARHPRKHFPGNPAR-ANGATSH 305
           S  PG G H L+     A       R   P +P R ANG++SH
Sbjct: 241 SSTPGHGNHQLQNNYGGASSRGAQSRGSPPRDPRRHANGSSSH 283


>AC006673-3|AAF39929.1|  861|Caenorhabditis elegans Hypothetical
           protein K09D9.11 protein.
          Length = 861

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -3

Query: 405 TTLKWSSAMLNRMQDILENTFLATQLEQ---MAQLRILAHSKTTYLTDS 268
           T ++WS +M   M   +   FLA  +++   +A L ILA S+  ++ DS
Sbjct: 737 TIIQWSESMAKGMMPYMHGVFLAIVMKKCKNLASLTILATSQGGFVMDS 785


>AL033510-4|CAA22070.2|  343|Caenorhabditis elegans Hypothetical
           protein Y40H7A.6 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 22  TVQFNMTWISFALLTFWFQLAEFTDPPCLIDLECAECIPDN-MPLVTSHRAT 174
           +V FN        +    Q+ +++D PC I+    EC  DN + + TS+  T
Sbjct: 74  SVNFNQMVYLVIQVRLQIQIWKYSDDPCQIEFPSTECYYDNSLYMFTSYLVT 125


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 147 HVIGNAFRTFQIYQARRISKF 85
           HV+G  + T ++YQA R++KF
Sbjct: 399 HVVGARYGTQKVYQANRLNKF 419


>AF039569-1|AAB99999.1|  451|Caenorhabditis elegans aryl hydrocarbon
           receptor nucleartranslocator ortholog AHA-1 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 299 RTLKRPISQTVVKVSCSGYIRNLPP--*HASTTSSPDAILKVPFVARC 162
           R L +   Q  V + C+GYI+N PP   +A  +S   AI +V  +  C
Sbjct: 233 RPLFQHAGQNYVVMHCTGYIKNAPPQGINAPASSCLVAIARVASMPVC 280


>Z81038-7|CAB02764.1|  453|Caenorhabditis elegans Hypothetical
           protein C25A1.11 protein.
          Length = 453

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 299 RTLKRPISQTVVKVSCSGYIRNLPP 225
           R L +   Q  V + C+GYI+N PP
Sbjct: 233 RPLFQHAGQNYVVMHCTGYIKNAPP 257


>AL132949-38|CAB61092.3| 1099|Caenorhabditis elegans Hypothetical
           protein Y53F4B.21 protein.
          Length = 1099

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -3

Query: 423 LLGLVRTTLKWSSAMLNRMQDILENTFLATQLEQMAQLRILAHSKTTYLT 274
           +L  + T  +    +L+    I E +FLA Q  +   LRIL+ ++ +Y++
Sbjct: 447 ILRAIETVKRLELFVLDNWSTIEEGSFLARQQWRKHMLRILSEARKSYVS 496


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,522,925
Number of Sequences: 27780
Number of extensions: 268732
Number of successful extensions: 749
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)