Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom...    26   3.0  
SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.8  

>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 381 MKYELNTSSRMTSTMKE*HRVIKTLIKSNLFYCYTI 274
           M  E+       +  K  HR++ T   +NL YCY I
Sbjct: 184 MSIEIPNQITCMNWSKSNHRMVYTADNNNLVYCYDI 219


>SPCC584.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 356 EDVLSSYFIGKISTRLRDSNIGTVALLNKPGVVSFRPLRL 475
           +DV  SYF+  +++R      G+V L N+  +++ R L +
Sbjct: 170 QDVKKSYFLASLTSRSLQFEGGSVGLSNR--IITHRELEM 207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,893
Number of Sequences: 5004
Number of extensions: 37923
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)