Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B02f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    27   6.9  
06_03_0045 - 15844748-15845021,15846349-15846560                       27   9.1  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    27   9.1  

>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = -1

Query: 227 MRCELFYPIIK*KIKLTFTCYLFYLFIYTLCTKQNLYTGGLNAL 96
           +R   ++ ++   + L   C++F +  YT+ T QN+  G L  L
Sbjct: 651 LRTLTWFIVLSLHVILISDCHMFTIAYYTVSTSQNINIGKLKVL 694


>06_03_0045 - 15844748-15845021,15846349-15846560
          Length = 161

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 496 IFIVISNKSQWPKGYNAWFIKQC 428
           I ++ S+K+  P G+N +F+K+C
Sbjct: 39  IKVIPSDKAPGPDGFNGFFLKKC 61


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 483 FQISRSGLKDTTPG-LLSNATVPMFESRRRVLIFPMKYELNTSSRMTSTMKE 331
           F I  SG+ D   G +L +     FE+      FPMKY  +TSS+ T   +E
Sbjct: 592 FLIVNSGVPDMHAGTILESRDATFFENE-----FPMKYTPSTSSKETVMPRE 638


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,959,918
Number of Sequences: 37544
Number of extensions: 215455
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)