Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334B02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 173 TCYLFYLFIYTLCTKQNLYTG 111
           T Y  Y  IYT+CTK NLY G
Sbjct: 23  TDYDIYKTIYTICTKINLYLG 43


>AL032663-5|CAA21765.1|  896|Caenorhabditis elegans Hypothetical
           protein Y75B12B.6 protein.
          Length = 896

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 408 IRTSALSHCLINQALYPLGHCDLFEITIKIFKQTLL 515
           I +S  ++C  NQ +Y +GHC      +++++Q LL
Sbjct: 315 INSSHNTYCSGNQLVYAIGHC---SADVEMYRQALL 347


>Z95310-2|CAB08563.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 477 ISRSGLKDTTPGLLSNATVPMFESRRRVLIFPMKYELNTSSRMTSTMK 334
           ++ S  K T P   S  + P F S     + PM    + S+  T+T K
Sbjct: 264 LTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMTTTSHPSTHTTTTQK 311


>Z83104-6|CAB05479.1|  394|Caenorhabditis elegans Hypothetical
           protein F09B12.5 protein.
          Length = 394

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 477 ISRSGLKDTTPGLLSNATVPMFESRRRVLIFPMKYELNTSSRMTSTMK 334
           ++ S  K T P   S  + P F S     + PM    + S+  T+T K
Sbjct: 264 LTSSSAKPTKPPTTSETSKPTFPSTLPAYVLPMTTTSHPSTHTTTTQK 311


>Z46996-7|CAE17681.1|  152|Caenorhabditis elegans Hypothetical
           protein C34C12.9 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -3

Query: 270 HSRRGINFGYHLKLDEM*AFLPDY*IKNKTNIY 172
           HSR+  + G+ +++DE+  F  DY +++ T  Y
Sbjct: 52  HSRKASSVGF-VEIDELLKFQDDYKVRSSTGFY 83


>U13645-9|AAM15545.1|  597|Caenorhabditis elegans Hypothetical
           protein C05D10.4b protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 49  HALSLHQPMVDWKRMPKALSPPVYKFCFVHK 141
           H L  HQ  ++WK+  KA + P++ F F+ +
Sbjct: 16  HLLKNHQ--IEWKKPVKAKASPIHLFVFLRE 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,747,336
Number of Sequences: 27780
Number of extensions: 209208
Number of successful extensions: 436
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)