Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein...   215   3e-57
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    29   0.56 
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    27   1.7  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    26   3.0  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    25   5.2  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   5.2  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    25   9.0  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    25   9.0  

>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score =  215 bits (525), Expect = 3e-57
 Identities = 102/172 (59%), Positives = 129/172 (75%), Gaps = 2/172 (1%)
 Frame = +1

Query: 10  IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKVLSWRNKLEKDIDEVLQTHTVFTNVSK 189
           I  P  QIRLTNV++V+ KKGGKRFE+ACYKNKV  WRNK+E D+DEVLQ H VF NVSK
Sbjct: 3   ISQPVGQIRLTNVSVVKYKKGGKRFEVACYKNKVTEWRNKIETDLDEVLQIHNVFNNVSK 62

Query: 190 GQVAKKEDLIKIFAKEDQTEICKEILEKGELQVSDKERHSQIDSLFKDIATTVADKCVNP 369
           G VA ++DL K F  +D  +I  EIL+KG+ QV +KERH Q+ S ++DI + V   C++P
Sbjct: 63  GHVASRQDLKKAFGTDDIDKIILEILQKGDFQVGEKERHHQMSSTYRDIVSHVTAMCMDP 122

Query: 370 ETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVIQIL--KNEIPIERAQM 519
            +KRPYP SIIEKA+ D  FSV+ +K+AK QAL+ I+ L  KNEIPI RA+M
Sbjct: 123 NSKRPYPASIIEKALSDCGFSVSTSKTAKSQALEAIKKLQEKNEIPIVRARM 174


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +1

Query: 346 VADKCVNPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQQALDVI 477
           + D CV  +  RP+ V I  +AI D  +    + S  ++  D++
Sbjct: 432 IIDLCVRVKALRPFSVDIFSQAILDPSYVSTTDCSVSEKRTDIL 475


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 70  GGKRFEIACYKNKVLS---WRNKLEKDIDEVLQTHTVF 174
           G + F I+ Y N +++   W+  +EK  D + + H VF
Sbjct: 775 GARGFSISLYLNTLIARDQWKQHIEKQQDIIRKRHLVF 812


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 NPETKRPYPVSIIEKAIKDVHFSVNVNKSAKQ 459
           N  + R   ++ IEKAI+ +  S N+NK+ ++
Sbjct: 162 NSSSNRIEGLADIEKAIRQIEISQNINKAERR 193


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
 Frame = +1

Query: 10  IFTPTNQIRLTNVAIVRLKKGGKRFEIACYKNKV---LSWRN-KLEKD 141
           +F+PT++ R TN+  V    G    E+  +  K+   +SWR   L+KD
Sbjct: 427 MFSPTSKNRATNINCVLSNLGKYNLELMNWHYKLPDTISWRTIDLKKD 474


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -1

Query: 239 SSLAKIFIKSSFFATCPLETFVKTV*VCRTSSMSFSSLFRQDSTLFL 99
           SS ++    SSF  T    TF+ TV V  +SS S +S     ST  L
Sbjct: 229 SSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAAL 275


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 455 FALLFTLTEKWTSLIAFSIIETGYGRFVSGLTHLSATVVAISLN 324
           F  LFT  E  T  +  +  + G   FVSG+   S+  +A  LN
Sbjct: 63  FTKLFTPIETLTFYVLLTSSKVGTYHFVSGVDASSSASLAAYLN 106


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 118 WRNKLEKDIDEVLQTHTVF 174
           W   LEKD+DE  + H +F
Sbjct: 917 WLKALEKDVDEKGEDHPLF 935


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.131    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,087
Number of Sequences: 5004
Number of extensions: 35641
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)