Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0430 + 3258438-3259200,3259929-3261454                           28   4.0  
12_02_0414 + 18824347-18825161,18826018-18828229                       27   9.1  
05_01_0120 - 828834-831143                                             27   9.1  

>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 79  YEYLPFDFKPYLTNLLRLK 23
           + Y+PFD  PYL  +L LK
Sbjct: 369 FSYMPFDLIPYLAGILSLK 387


>12_02_0414 + 18824347-18825161,18826018-18828229
          Length = 1008

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 386 LSRTLTKLALSFTRFDCEKLLFL-CL 312
           L   L+KL LS+T   CE LL L CL
Sbjct: 856 LDHALSKLYLSYTGLSCEALLLLQCL 881


>05_01_0120 - 828834-831143
          Length = 769

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 17/71 (23%), Positives = 26/71 (36%)
 Frame = +1

Query: 235 NPTPPGLSPCSSTCPGKTGKGRQ*SLKHKKRSFSQSNLVKLNASFVNVLDSVKVNSNTTA 414
           NPT PG S        K G+G +  L   +    +  +   +     V D V +  +  A
Sbjct: 101 NPTTPGASKAEGAGSAKPGEGLRLDLSSLRSQGRKDQIAFFDKECSKVADHVYLGGDAVA 160

Query: 415 PLAEIAGKRSI 447
              +I  K  I
Sbjct: 161 KNRDILRKNGI 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,600,495
Number of Sequences: 37544
Number of extensions: 204966
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)