Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan...    28   4.7  
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella...    28   4.7  
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
           abnormal protein1 protein.
          Length = 1732

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 277 GRWTSKGSSQEGWDLLTATRAPPKET*QLKSSYFANESTTGSESRPAE 134
           G +TS     E  +L      P  E  QLK+SY    S TG +S+ AE
Sbjct: 702 GMYTSLHKWDEALELAKVLNYPEYE--QLKTSYLRALSDTGQDSKAAE 747


>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
           transport protein protein.
          Length = 1737

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 277 GRWTSKGSSQEGWDLLTATRAPPKET*QLKSSYFANESTTGSESRPAE 134
           G +TS     E  +L      P  E  QLK+SY    S TG +S+ AE
Sbjct: 707 GMYTSLHKWDEALELAKVLNYPEYE--QLKTSYLRALSDTGQDSKAAE 752


>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
           protein F52H3.7a protein.
          Length = 1245

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 361 ASFVNVLDSVKVNSNTTAPLAEIAGKRSIQ 450
           AS  +V+++V + SN +AP  E A   SIQ
Sbjct: 736 ASVEDVIEAVHIASNESAPTTEAAPSESIQ 765


>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +1

Query: 226 LLANPTPPGLSPCSSTCPGKTGKGRQ*SLKHKKRSFSQSNLVK 354
           LL +PT   +S C +TC    GK     +  ++  FS  +L+K
Sbjct: 214 LLLSPTLEAISVCRATCSVIVGKDDHMVMVRERGQFSSFSLLK 256


>Z50863-2|CAA90737.1|  351|Caenorhabditis elegans Hypothetical
           protein C14H10.4 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = -1

Query: 497 CASFLTCSIA*KLTPICMERLPAISARGAVVFELTFTLSRTLTKLALSFTRFDCEKLLFL 318
           CASFLT      LT   ++ L     +  ++F L   L   +  LA  F       L+F 
Sbjct: 16  CASFLTNFFVIYLTTFFVKNLIGTYKKMILIFSLLGILFSGIEILARPFAHNYNNSLMFF 75

Query: 317 CLRDYWRPFPVLP 279
            L ++W     LP
Sbjct: 76  SL-NFWTSSQTLP 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,037
Number of Sequences: 27780
Number of extensions: 182841
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)