Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.    21   5.8  
AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor pro...    21   5.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.7  

>U15954-1|AAA67442.1|   53|Apis mellifera abaecin precursor protein.
          Length = 53

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 299 RPFPVLPGQ 273
           RPFP  PGQ
Sbjct: 32  RPFPTFPGQ 40


>AF442147-1|AAL35348.1|   33|Apis mellifera abaecin precursor
           protein.
          Length = 33

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -1

Query: 299 RPFPVLPGQ 273
           RPFP  PGQ
Sbjct: 18  RPFPTFPGQ 26


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +1

Query: 379 LDSVKVNSNTTAPLAEI 429
           +DS++ N+NT++  AEI
Sbjct: 254 VDSLRSNANTSSQSAEI 270



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 237 SHPSWLEPLLVHLPW*NWKGPPVISQT 317
           SHP +   L   LPW   +  P+   T
Sbjct: 331 SHPKYRLELQKRLPWLELQEKPISDST 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,215
Number of Sequences: 438
Number of extensions: 2196
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)