Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit Arc4|...   134   1e-32
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   2.2  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   3.0  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    26   3.9  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   5.2  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.2  
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom...    25   6.8  
SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   9.0  

>SPAC6G9.07c |arc4||ARP2/3 actin-organizing complex subunit
           Arc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score =  134 bits (323), Expect = 1e-32
 Identities = 61/89 (68%), Positives = 75/89 (84%)
 Frame = +2

Query: 5   DEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYFM 184
           DEIE+IL +KFM+F+M RAE+F +LRRKPV GY ISFLITN+HTE+M KHKLVDF+I FM
Sbjct: 80  DEIERILVRKFMQFLMGRAESFFILRRKPVQGYDISFLITNYHTEEMLKHKLVDFIIEFM 139

Query: 185 EEIDKEISEMKLAVNARARICSEEFLKRF 271
           EE+D EISEMKL +N RAR+ +E +L  F
Sbjct: 140 EEVDAEISEMKLFLNGRARLVAETYLSCF 168


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +2

Query: 173  IYFMEEIDKEISEMKLAVNARARICSEEFLKRF*LLLS 286
            ++F E+ D+E+ +  +AV+ +  I SE++  R   +LS
Sbjct: 2014 VFFAEDRDEELIQPDVAVDPKLDITSEDYDDRIATILS 2051


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -2

Query: 64  FSSHHHEPHKFFTKNFLYLIR 2
           F+ H+HE  +F  K FLY+ +
Sbjct: 353 FNEHYHEVMEFIEKLFLYIFK 373


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = +2

Query: 107 ISFLITNFHTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKR 268
           I+F +   H    + H +    +   +  +    E +  V   A++C EEF KR
Sbjct: 277 INFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKR 330


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 83   RKPVDGYHISFLITNFHTEQMYKHKLVD 166
            RK    Y ++  +   HT++M++HKLV+
Sbjct: 1646 RKEAGSYILNPSLDLKHTQEMFEHKLVE 1673


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 19/79 (24%), Positives = 31/79 (39%)
 Frame = +2

Query: 2    ADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
            A +   I C     F++   E    L+++  DGY  +    NF  E     KL+ F    
Sbjct: 1827 ASQSSLIFCYNVYEFVVKEKETVAALKQQENDGYRSA---PNFFLEN--SKKLIRFTFDV 1881

Query: 182  MEEIDKEISEMKLAVNARA 238
            +  +  +  E+  A N  A
Sbjct: 1882 LRGVSNKHKELLTARNMAA 1900


>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 420

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/47 (21%), Positives = 27/47 (57%)
 Frame = +2

Query: 131 HTEQMYKHKLVDFVIYFMEEIDKEISEMKLAVNARARICSEEFLKRF 271
           H++++ +       +  + + + +I E + ++  +AR+C  +FLKR+
Sbjct: 78  HSKELPQDSSYGITLSQLGKANLKIGEHQTSLAYKARVCYLDFLKRY 124


>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 422 KMTFKYGILEETIFFFLYLFSGSL 493
           K+  +YG+L  T F F  LF  S+
Sbjct: 16  KVAARYGVLMSTSFIFALLFHSSV 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,075
Number of Sequences: 5004
Number of extensions: 40528
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)