Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0675 + 35455968-35455970,35456314-35456379,35456513-354565...   138   2e-33
01_01_1202 - 9681836-9683146                                           29   1.7  
01_05_0217 - 19390788-19391048,19392205-19392438,19393474-193937...    27   9.1  

>03_06_0675 +
           35455968-35455970,35456314-35456379,35456513-35456565,
           35457142-35457169,35457837-35457911,35458020-35458124,
           35458278-35458367,35458454-35458543
          Length = 169

 Score =  138 bits (334), Expect = 2e-33
 Identities = 62/90 (68%), Positives = 76/90 (84%)
 Frame = +2

Query: 2   ADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
           ADE+E IL KKF+RF+ MRAE F VLRRKPV GY ISFLITN+H E M+KHKL+DF++ F
Sbjct: 79  ADELENILAKKFLRFLSMRAEAFQVLRRKPVQGYDISFLITNYHCEDMHKHKLIDFIVQF 138

Query: 182 MEEIDKEISEMKLAVNARARICSEEFLKRF 271
           ME+IDKEISE+KL+VN R R+ + EFLK+F
Sbjct: 139 MEDIDKEISELKLSVNTRGRLVATEFLKQF 168


>01_01_1202 - 9681836-9683146
          Length = 436

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 144 ICSVWKLVIKKLIWYPSTGFLLNTMKFSALIIM 46
           + +V   V+  L +Y  TGFL N M+FSA  ++
Sbjct: 62  LVAVVTFVLVALYYYRCTGFLKNYMRFSAFFVL 94


>01_05_0217 -
           19390788-19391048,19392205-19392438,19393474-19393798,
           19395781-19396121,19396422-19396502,19396640-19396759,
           19397028-19397129,19397811-19397946,19398508-19398654,
           19399024-19399337
          Length = 686

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
 Frame = +2

Query: 8   EIEKILCKKFMRFMMMRAENFIVLRRK--PVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
           EI   +  +F+     R + F VL R   P     I  L+ +F       H L   V+Y 
Sbjct: 178 EIVATMRLRFLASEKRRPDQFTVLVRNIPPDPDESIGELVEHFFLVNHPDHYLTHQVVYN 237

Query: 182 MEEIDKEISEMKLAVN 229
             ++DK + E K   N
Sbjct: 238 ANKLDKMVKEKKKMQN 253


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,159
Number of Sequences: 37544
Number of extensions: 200326
Number of successful extensions: 338
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)