Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS334A09f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF019888-1|AAB71548.1| 168|Homo sapiens Arp2/3 complex 20 kDa s... 170 2e-42
AF006087-1|AAB64192.1| 168|Homo sapiens p20-Arc protein. 170 2e-42
BC012596-1|AAH12596.3| 78|Homo sapiens actin related protein 2... 145 7e-35
M23294-1|AAA52645.1| 556|Homo sapiens beta-hexosaminidase beta-... 31 2.4
M19735-1|AAA68620.1| 544|Homo sapiens beta-hexosaminidase beta-... 31 2.4
M13519-1|AAA51828.1| 572|Homo sapiens HEXB protein. 31 2.4
BT009919-1|AAP88921.1| 556|Homo sapiens hexosaminidase B (beta ... 31 2.4
BC017378-1|AAH17378.1| 556|Homo sapiens hexosaminidase B (beta ... 31 2.4
AF378118-1|AAM46114.1| 556|Homo sapiens cervical cancer proto-o... 31 2.4
>AF019888-1|AAB71548.1| 168|Homo sapiens Arp2/3 complex 20 kDa
subunit protein.
Length = 168
Score = 170 bits (414), Expect = 2e-42
Identities = 80/90 (88%), Positives = 85/90 (94%)
Frame = +2
Query: 2 ADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
ADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITNFHTEQMYKHKLVDFVI+F
Sbjct: 79 ADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHF 138
Query: 182 MEEIDKEISEMKLAVNARARICSEEFLKRF 271
MEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 139 MEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>AF006087-1|AAB64192.1| 168|Homo sapiens p20-Arc protein.
Length = 168
Score = 170 bits (414), Expect = 2e-42
Identities = 80/90 (88%), Positives = 85/90 (94%)
Frame = +2
Query: 2 ADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
ADEIEKILC KFMRFMMMRAENF +LRRKPV+GY ISFLITNFHTEQMYKHKLVDFVI+F
Sbjct: 79 ADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHF 138
Query: 182 MEEIDKEISEMKLAVNARARICSEEFLKRF 271
MEEIDKEISEMKL+VNARARI +EEFLK F
Sbjct: 139 MEEIDKEISEMKLSVNARARIVAEEFLKNF 168
>BC012596-1|AAH12596.3| 78|Homo sapiens actin related protein 2/3
complex, subunit 4, 20kDa protein.
Length = 78
Score = 145 bits (352), Expect = 7e-35
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = +2
Query: 38 MRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYFMEEIDKEISEMK 217
MRF MMRAENF +LRRKPV+GY ISFLITNFHTEQMYKHKLVDFVI+FMEEIDKEISEMK
Sbjct: 1 MRFTMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMK 60
Query: 218 LAVNARARICSEEFLKRF 271
L+VNARARI +EEFLK F
Sbjct: 61 LSVNARARIVAEEFLKNF 78
>M23294-1|AAA52645.1| 556|Homo sapiens beta-hexosaminidase
beta-subunit protein.
Length = 556
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 175 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 233
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 234 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 265
>M19735-1|AAA68620.1| 544|Homo sapiens beta-hexosaminidase
beta-subunit protein.
Length = 544
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 163 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 221
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 222 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 253
>M13519-1|AAA51828.1| 572|Homo sapiens HEXB protein.
Length = 572
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 191 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 249
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 250 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 281
>BT009919-1|AAP88921.1| 556|Homo sapiens hexosaminidase B (beta
polypeptide) protein.
Length = 556
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 175 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 233
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 234 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 265
>BC017378-1|AAH17378.1| 556|Homo sapiens hexosaminidase B (beta
polypeptide) protein.
Length = 556
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 175 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 233
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 234 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 265
>AF378118-1|AAM46114.1| 556|Homo sapiens cervical cancer
proto-oncogene 7 protein.
Length = 556
Score = 31.1 bits (67), Expect = 2.4
Identities = 25/92 (27%), Positives = 42/92 (45%)
Frame = -1
Query: 413 YNLFVYEGNMNSITN*NYIAIKATNFSHEFILYVQ*RCFILSLKEVVKISSRILPNKFWL 234
++ VY+ + + T I + FSH IL R + L +K ++K + NKF +
Sbjct: 175 FSQLVYQDSYGTFTINESTIIDSPRFSHRGILIDTSRHY-LPVKIILKTLDAMAFNKFNV 233
Query: 233 LH*QPISFH*FLYQFLP*SILQNRPIYAYTSV 138
LH + F YQ + L N+ Y+ + V
Sbjct: 234 LHWHIVDDQSFPYQSITFPELSNKGSYSLSHV 265
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,711,197
Number of Sequences: 237096
Number of extensions: 1307075
Number of successful extensions: 1565
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1565
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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