Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21324-16|AAK93841.1|  169|Caenorhabditis elegans Arp2/3 complex...   146   1e-35
Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astaci...    27   8.1  

>U21324-16|AAK93841.1|  169|Caenorhabditis elegans Arp2/3 complex
           component protein 6 protein.
          Length = 169

 Score =  146 bits (353), Expect = 1e-35
 Identities = 67/90 (74%), Positives = 79/90 (87%)
 Frame = +2

Query: 2   ADEIEKILCKKFMRFMMMRAENFIVLRRKPVDGYHISFLITNFHTEQMYKHKLVDFVIYF 181
           +DEIEKILC KF RFM  RA+NF VLRRKP+ GY ISFLIT  HTE M+KHKLVDF+++F
Sbjct: 79  SDEIEKILCHKFTRFMCQRADNFFVLRRKPLPGYDISFLITASHTEAMFKHKLVDFLLHF 138

Query: 182 MEEIDKEISEMKLAVNARARICSEEFLKRF 271
           M+EIDKEISEMKL++NARAR+ +EEFLKRF
Sbjct: 139 MQEIDKEISEMKLSLNARARVSAEEFLKRF 168


>Z34533-1|CAA84302.3|  730|Caenorhabditis elegans Hypothetical
           protein B0285.1 protein.
          Length = 730

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -3

Query: 144 ICSVWKLVIKKLIWYPSTGFLLNTMKFSALIIMNR 40
           ICS++K +++ L +  +TGFL   +K S +++ N+
Sbjct: 421 ICSLFKQLLEGLAYIHNTGFLHRDIKCSNILVNNK 455


>U46668-4|AAA93348.3|  951|Caenorhabditis elegans Nematode astacin
           protease protein39 protein.
          Length = 951

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = +2

Query: 95  DGYHISFLITNFHTEQMYKHKLVDFV-IYFMEEIDKEISEMKLAVNARARI 244
           DGYHI    T F+ E M      D+V I   E++  E  E  L    R R+
Sbjct: 576 DGYHIFLNFTKFNVEGMKTECAYDYVKIGDSEKLCGEYHEALLFTTPRNRV 626


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,126,705
Number of Sequences: 27780
Number of extensions: 215722
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)