Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A08f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.09c |tim23||mitochondrial inner membrane presequence t...    28   0.73 
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    26   3.0  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   3.9  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   5.2  

>SPCC16A11.09c |tim23||mitochondrial inner membrane presequence
           translocase complex subunit Tim23|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +2

Query: 170 TSYLNGLIFYGLCGINGKVKKQK 238
           TSYL+GL   GL G+N  +KK K
Sbjct: 89  TSYLSGLAIGGLWGLNEGMKKTK 111


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +1

Query: 172 ILFKW--FNFLWSVWNKW*SKKTKKDFNF 252
           I+  W  F+ L S+ NKW   ++K DF F
Sbjct: 56  IVLAWYFFSLLLSMMNKWIFSESKMDFQF 84


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 NGLIFYGLCGINGKVKKQKKTSILLLL 262
           N L+F+GL GIN   + Q + S+  L+
Sbjct: 510 NKLVFHGLFGINDPPRPQVRESVQYLM 536


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 81  FKNILAANTVLEIPHI 128
           F N +++NTVL IPH+
Sbjct: 179 FSNFISSNTVLLIPHL 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,800,840
Number of Sequences: 5004
Number of extensions: 31755
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)