Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    28   0.73 
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual     28   0.73 
SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13 |Schizosa...    26   3.9  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   9.0  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    25   9.0  

>SPBC119.07 |ppk19||serine/threonine protein kinase
           Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -1

Query: 287 VTRNALCA*LAPDCVMRARANQNRTSMSHEMRYA--PDWLL 171
           + R +L   LAP CV   +A  N   +SH + Y    DW+L
Sbjct: 607 IVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLNDTDWML 647


>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 44  NNERNA-RSVRGFVADCRRSSPASPAITRPRVGS*LARARITQS 172
           NNE NA RS    + + R+S+  SP++     G+ +  AR++ S
Sbjct: 239 NNENNALRSTANVINNTRQSTATSPSMFAGNSGNQIGLARVSSS 282


>SPAC1805.03c |trm13||tRNA 2'-O-methyltransferase Trm13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 407

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 125 ALSQVTPGCCAGSPPQSLVLIARFSHYC 42
           A + +T  C   SPP +LV+     H+C
Sbjct: 270 AATDLTLNCLKSSPPNALVIALCCHHHC 297


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = -3

Query: 414 INVCNACKDLEKFIVFGVYSFRID 343
           +++ +AC+DL K+ +   + F+ID
Sbjct: 328 LSITDACRDLWKWTIENPFGFQID 351


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 2   NETQNKRLTNI*KYNNERNARSVRGFVADCRRSSPASPAITRPRVG 139
           N  Q  R+T+   +N +  + +   FV DC   +  SP +  P++G
Sbjct: 368 NSMQKMRVTSPVDHNEQPESSTAEMFV-DCTIEASQSPLLHIPKLG 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,171
Number of Sequences: 5004
Number of extensions: 38158
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)