Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0240 + 23851859-23851917,23852018-23852087,23852177-238533...    30   1.3  
02_01_0694 - 5194649-5195227                                           27   6.9  
08_02_0288 + 15352104-15352294,15352806-15352831,15352890-153530...    27   9.1  
01_05_0432 - 22087658-22087999                                         27   9.1  

>04_04_0240 +
           23851859-23851917,23852018-23852087,23852177-23853394,
           23853504-23854040
          Length = 627

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 64  ISTRLCGGLPAQQPGVTCDNAAARWLLIGARTHHAIRSQSG 186
           ++ +  G + A+  G T    A RWL I A+ HHA    +G
Sbjct: 206 VAVKATGTVHAKAIGDTLKAYARRWLPIAAKNHHAAERTAG 246


>02_01_0694 - 5194649-5195227
          Length = 192

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -3

Query: 168 CVMRARANQEPTRGRVIAGDAGLLRRQSATKP 73
           C+ R R +  P   RVIA D  L    +A  P
Sbjct: 7   CISRRRGSPVPAPARVIAADGSLKELHAAASP 38


>08_02_0288 +
           15352104-15352294,15352806-15352831,15352890-15353074,
           15353850-15353896,15354224-15354269
          Length = 164

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 131 AAALSQVTPGCCAGSPPQSLVLIARFS 51
           A A++ +TP CC G+    L+   RFS
Sbjct: 2   AMAVAWLTPQCCIGAGSAILIFYTRFS 28


>01_05_0432 - 22087658-22087999
          Length = 113

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 53  RNARSVRGFVADCRRSSPASPAITRPR 133
           R AR++   V  CR S P++P   RPR
Sbjct: 79  RRARAIVQAVTHCRLSRPSTPPPRRPR 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,709
Number of Sequences: 37544
Number of extensions: 248178
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)