Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
 Frame = -1

Query: 419 NVLTCAMHVKIL---RSLSFLEFTPLESIYIY 333
           +VL+  +H+ IL   R L++LE T L ++YIY
Sbjct: 189 SVLSSLLHLSILNKIRKLAYLESTQLNNLYIY 220


>Z93375-2|CAB07564.2|  359|Caenorhabditis elegans Hypothetical
           protein C38C6.4 protein.
          Length = 359

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 420 IMYLNNVIVFVILLRYI*NIY*AVKT*Q 503
           + Y+   ++F++L  Y+ N+Y  +KT Q
Sbjct: 36  VFYIQIALIFIVLFYYLLNVYIDIKTCQ 63


>Z82075-1|CAB04930.1|  320|Caenorhabditis elegans Hypothetical
           protein W07A8.1 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +2

Query: 410 LIHYNVSQ*CYCFCYLTPIYIEYILSC*NVTMLL 511
           LI  NV+   +  CYLTP+++++I++   +++ L
Sbjct: 87  LIGSNVTL-VFLICYLTPLFLDWIITLHRISIFL 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,593
Number of Sequences: 27780
Number of extensions: 218540
Number of successful extensions: 439
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)