Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    78   7e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    78   7e-16
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ...    29   0.32 
SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   9.0  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   9.0  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    25   9.0  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = +3

Query: 3   SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 182
           S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR+
Sbjct: 136 SKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRR 195

Query: 183 IKSKR 197
           +  K+
Sbjct: 196 MAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 78.2 bits (184), Expect = 7e-16
 Identities = 38/65 (58%), Positives = 47/65 (72%)
 Frame = +3

Query: 3   SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 182
           S+   RK+ AR   +KV+ ALE QF  GRL A V+SRPGQ GR DGYILEG+EL FYLR+
Sbjct: 136 SKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSRPGQSGRCDGYILEGEELHFYLRR 195

Query: 183 IKSKR 197
           +  K+
Sbjct: 196 MAPKK 200


>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 655

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 174 DRTRVLCLLRCNHRRDHTDLGDSPRKPANAPCGIALLE 61
           D   + CLLR  H+RD  +  +  RK  N   G  LLE
Sbjct: 434 DANIIPCLLRSKHKRDKANPENKERKLVNNLLGAQLLE 471


>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 311 FRLDLFLLHYLDARLHIRETTTLTVKNL 394
           FR+ LFL H   A LH   T TL++ NL
Sbjct: 144 FRIVLFLSHASPAILHTIFTFTLSIPNL 171


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -2

Query: 511 AARRDRRLSRPTSWNPYRAIRR 446
           AA R+  L+RPTS+N    IRR
Sbjct: 214 AAARNPLLNRPTSFNRQTRIRR 235


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 136 SARPH*PGRLATQASKRPVWNCSSRAPSTLARRC 35
           S +PH P +  T+   +P  +  S   S LAR+C
Sbjct: 154 SEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKC 187


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 251 FLFSYVYSLIILIVGVGEFIFRLDLFLLHYLDARLHIRETTTLTVKNLLQTEVRL 415
           FLF+Y   L IL V    FIFR    L+ +      +R    L  KN+++  + L
Sbjct: 218 FLFAYGIHLNILCVIAQMFIFREQ--LIDHPSPMTLLRTFPPLNAKNIMKITILL 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,039
Number of Sequences: 5004
Number of extensions: 38216
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)