Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A02f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal prote...    91   6e-19
Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U40799-7|AAA81485.1|  208|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 8 protein.
          Length = 208

 Score = 90.6 bits (215), Expect = 6e-19
 Identities = 42/67 (62%), Positives = 54/67 (80%)
 Frame = +3

Query: 3   SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 182
           S  T +KY  RQ+ A V+  L EQF+TGRLLA ++S PGQ G+A+GYILEGKEL+FYLRK
Sbjct: 142 SHHTMKKYTERQKTAAVDALLIEQFNTGRLLARISSSPGQVGQANGYILEGKELDFYLRK 201

Query: 183 IKSKRAK 203
           I++K+AK
Sbjct: 202 IRAKKAK 208


>Z98851-2|CAB11536.1|  324|Caenorhabditis elegans Hypothetical
           protein H12I19.2 protein.
          Length = 324

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/54 (27%), Positives = 30/54 (55%)
 Frame = +2

Query: 251 FLFSYVYSLIILIVGVGEFIFRLDLFLLHYLDARLHIRETTTLTVKNLLQTEVR 412
           ++F Y+  LII +  +  F+  +  FLL++        + T L+ +N+LQ +V+
Sbjct: 105 YVFLYIMYLIIQVYHLLIFLLAVGRFLLYFFPK----TKETVLSAQNILQRKVK 154


>Z93396-3|CAB07712.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC15.5 protein.
          Length = 597

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 79  WNCSSRAPSTLARRCLA 29
           W C +RAP+T+  RC A
Sbjct: 555 WTCQTRAPTTIILRCPA 571


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,332,611
Number of Sequences: 27780
Number of extensions: 217201
Number of successful extensions: 598
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)