Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS334A02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   113   1e-27
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.7  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  113 bits (272), Expect = 1e-27
 Identities = 52/67 (77%), Positives = 59/67 (88%)
 Frame = +3

Query: 3   SQKTARKYLARQRLAKVEGALEEQFHTGRLLACVASRPGQCGRADGYILEGKELEFYLRK 182
           S+K   KY ARQR AKVE ALEEQF TGR+LAC++SRPGQCGR DGYILEGKELEFY+R+
Sbjct: 142 SKKAEAKYKARQRFAKVEPALEEQFATGRVLACISSRPGQCGREDGYILEGKELEFYMRR 201

Query: 183 IKSKRAK 203
           IKSK+AK
Sbjct: 202 IKSKKAK 208


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 428 HQHRLSSPNGPVGVPTRGP 484
           H HR SSP+   G  T GP
Sbjct: 327 HPHRGSSPHHQHGNHTMGP 345



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 443 SSPNGPVGVPT 475
           S P GP GVPT
Sbjct: 397 SPPRGPGGVPT 407


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 SFFIALSRCTATYSRNYYVDCEELASD 402
           SF   L RC  +  + Y  D   LASD
Sbjct: 430 SFIGTLQRCLLSLEKTYERDTCLLASD 456


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +1

Query: 322 SFFIALSRCTATYSRNYYVDCEELASD 402
           SF   L RC  +  + Y  D   LASD
Sbjct: 468 SFIGTLQRCLLSLEKTYERDTCLLASD 494


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 470 PTRGPAQASVAACCPKT 520
           P R P+  + A+ CP+T
Sbjct: 679 PARSPSSQAQASQCPQT 695


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,908
Number of Sequences: 438
Number of extensions: 2546
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)