Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|...    27   1.3  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   3.9  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   6.8  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   9.0  
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    25   9.0  

>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 316 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 444
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -1

Query: 182 FIKLYIFLNTYKLPTVKLYVLNSLRKFCTEH 90
           F+K +   ++++     LY LNS+R+  T+H
Sbjct: 245 FLKSFAMFSSFRSQNANLYNLNSIRRNLTKH 275


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 115 LFNTYNLTVGNLYVFKKIYNLIN 183
           L N Y   + N YVFK++Y++ N
Sbjct: 446 LLNDYEENLKNTYVFKELYSVRN 468


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 349 VEAEPVVRHYLSELDK-SIIFVYVDVGDREYW 441
           V+  P  RH L+E+DK S +   V  G  +YW
Sbjct: 121 VQVSPEARHKLAEIDKGSHLEANVSGGLLKYW 152


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 56  YHYMYLMIILPNALYRIFLNCSIH 127
           +H M+ ++I   AL  +F N  IH
Sbjct: 493 FHVMHQLVIATTALRSMFTNAEIH 516


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 316 LPDGNSWCPDCVEAEPVVRHYLSELDK 396
           L D N+ CP C+    + + YL+++++
Sbjct: 261 LLDPNTTCPQCMARRKMQQKYLAQIEE 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,610
Number of Sequences: 5004
Number of extensions: 45750
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)