Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   2.2  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   5.2  
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ...    25   6.8  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    25   9.0  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 90  DCRPGAGAPPH-ELPHPAPNGAPP 158
           + RP   APP   +P P+P  APP
Sbjct: 136 ELRPPTSAPPRPSIPPPSPASAPP 159


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   NFQFPKQLNTDGGSGINCSGRSISISA 82
           N Q P+ L T+    I   GRSI+++A
Sbjct: 625 NNQMPQVLETEAAPSIASEGRSITVNA 651


>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +3

Query: 120 HELPHPAPNGAPPDNHH 170
           H LPHP     PPD  H
Sbjct: 238 HSLPHPPNMFEPPDEDH 254


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +3

Query: 126 LPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAIRVSTPATNTTA 293
           L  PAPN    DN+++            +GGS      ++S  A+ +++  +N++A
Sbjct: 200 LDRPAPNYGI-DNYNDFNTFYYQAASGTSGGSSGSPVLDISGAAVALNSGGSNSSA 254


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 251 RADVVSSHVPAAP 213
           RAD VS HVPA+P
Sbjct: 247 RADFVSLHVPASP 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,180
Number of Sequences: 5004
Number of extensions: 16538
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)