Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333H09f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0430 - 3058832-3058952,3059590-3059795,3060103-3060294,306... 34 0.080
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 34 0.080
12_01_0239 - 1793612-1793716,1793808-1793826,1794424-1794599,179... 30 0.98
11_01_0242 - 1862106-1862210,1862302-1862320,1863082-1863257,186... 30 0.98
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 30 1.3
02_04_0289 + 21615745-21616155,21617417-21617870,21618162-216182... 29 2.3
04_04_0779 - 28023735-28024058,28024520-28024618,28024704-280249... 29 3.0
06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330 28 4.0
01_02_0007 + 10132380-10133201 27 6.9
10_05_0069 + 8782535-8782920,8783016-8783281,8783588-8783869,878... 27 9.1
06_03_1037 - 27058002-27058082,27058856-27059041,27060033-270601... 27 9.1
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 27 9.1
03_01_0014 + 113638-113754,113836-113950,114570-114835,115365-11... 27 9.1
02_02_0609 + 12105616-12106336,12106514-12106646,12107849-121080... 27 9.1
>06_01_0430 -
3058832-3058952,3059590-3059795,3060103-3060294,
3061241-3061287,3062233-3062455
Length = 262
Score = 33.9 bits (74), Expect = 0.080
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Frame = +3
Query: 99 PGAGAPPHEL---PHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAIRVS 269
P G P H + P P P A P +HH A S MG V PA R++
Sbjct: 29 PRVGQPSHGVANAPPPEPPRAAPYHHHGPPTVSAAPHPVPASSSTSMGIQVVIKPAYRIT 88
Query: 270 TP 275
P
Sbjct: 89 PP 90
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 33.9 bits (74), Expect = 0.080
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = +3
Query: 99 PGAGAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAIRVSTPA 278
P A PP P PAP PP +HH+ G GT P + PA
Sbjct: 273 PAAPPPPAGPPPPAPPPLPPSHHHHHGHHPPPPHPLPPGAGAGAGTGAPPPPPAHPAAPA 332
>12_01_0239 -
1793612-1793716,1793808-1793826,1794424-1794599,
1794701-1794747,1795760-1796291
Length = 292
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 102 GAGAPPHELPHPAPNGAPP 158
G GAPP P+ AP GAPP
Sbjct: 76 GYGAPPSSQPYGAPYGAPP 94
>11_01_0242 -
1862106-1862210,1862302-1862320,1863082-1863257,
1863359-1863405,1864443-1865022
Length = 308
Score = 30.3 bits (65), Expect = 0.98
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +3
Query: 102 GAGAPPHELPHPAPNGAPP 158
G GAPP P+ AP GAPP
Sbjct: 92 GYGAPPSSQPYGAPYGAPP 110
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -3
Query: 129 GAREAERPLPAC--SPPLADMLILRPEQFI-PLPPSVFN 22
G P+P+C S PL + L+L+ P+PPS+FN
Sbjct: 206 GNNSLSGPIPSCIGSLPLLERLVLQCNNLTGPVPPSIFN 244
>02_04_0289 +
21615745-21616155,21617417-21617870,21618162-21618217,
21618307-21618437,21618565-21618727
Length = 404
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 105 AGAPPHELPHPAPNGAPPDNHHN 173
A AP H PHP +G P HH+
Sbjct: 19 AAAPHHHHPHPHAHGMHPHAHHH 41
>04_04_0779 -
28023735-28024058,28024520-28024618,28024704-28024940,
28025227-28025334,28025427-28025486,28025813-28025888,
28025984-28026144,28026374-28026436,28026543-28026630,
28026872-28027612,28027695-28028239
Length = 833
Score = 28.7 bits (61), Expect = 3.0
Identities = 19/61 (31%), Positives = 20/61 (32%)
Frame = +3
Query: 108 GAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAIRVSTPATNT 287
G PP LP P PN PP H N + D H S V A N
Sbjct: 114 GKPPLLLPLPKPN-RPPRRHGNSEVVSEIVVASPSSNCSDSDDHGDSQLQSPVGNDAENA 172
Query: 288 T 290
T
Sbjct: 173 T 173
>06_03_0996 + 26731442-26732121,26732573-26732772,26732930-26733330
Length = 426
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 19/48 (39%)
Frame = +3
Query: 108 GAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSS 251
GAPPHE P +HH+ G G G++N+ S
Sbjct: 335 GAPPHESSAPQIGAMLHHHHHHQQDHMQVSSLVHINGGGGGGSNNILS 382
>01_02_0007 + 10132380-10133201
Length = 273
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 96 RPGAGAPPHELPHPAPNGAP 155
+P APP LP P PN P
Sbjct: 201 QPDPNAPPQPLPQPDPNSPP 220
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +3
Query: 96 RPGAGAPPHELPHPAPNGAPP 158
+P APP LP P PN P
Sbjct: 178 QPDPNAPPQPLPQPDPNNPQP 198
>10_05_0069 +
8782535-8782920,8783016-8783281,8783588-8783869,
8784559-8784632,8787230-8787461,8788067-8788077
Length = 416
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 171 CGDCQEEHRSEQGAGAREAERPLPACSPP-LADMLILRPEQFIP 43
CG +E +++ AGAREA RP CSP LA + L E IP
Sbjct: 68 CGRLREVLLTDEAAGAREA-RP---CSPDRLASIARLLEEHEIP 107
>06_03_1037 -
27058002-27058082,27058856-27059041,27060033-27060176,
27060284-27061183
Length = 436
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +3
Query: 102 GAGAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDMGTHNVSSPAI 260
G G PP P AP PD+ G G+ +VSSP +
Sbjct: 40 GRGLPPSATPPRAPGSPVPDDDDGGGADPFSSPAPIGRGRGEAVIPSVSSPPL 92
>05_01_0460 -
3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 99 PGAGAPPHELPHPAPNGAPP 158
PG GAPP LP A PP
Sbjct: 8 PGTGAPPPPLPAAAAAAGPP 27
>03_01_0014 +
113638-113754,113836-113950,114570-114835,115365-115575,
115915-115979,118723-118930,119457-119566,119663-119913,
120250-120356,120442-120509,120624-120701,121070-121198,
121341-121481,122297-122344,122648-122743,124071-124183,
124441-124591,124745-124818,124913-125072,125356-125454,
125532-125618,125761-125907
Length = 946
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -3
Query: 171 CGDCQEEHRSEQGAGAREAERPLPACSPPLADMLILRPEQFIPLPPSVFN 22
C +CQE HR G A + P+ +PP + + E P+ P + N
Sbjct: 182 CANCQE-HRERTGRLAENSAVPMTVVNPPAVQEMSM-AESRGPVSPGMEN 229
>02_02_0609 +
12105616-12106336,12106514-12106646,12107849-12108048,
12108184-12108635,12109018-12109323
Length = 603
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +3
Query: 108 GAPPH-ELPHPAPNGAPPDNH 167
GAPP ELP P P APP H
Sbjct: 366 GAPPAAELPAPVPAPAPPAAH 386
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,718,001
Number of Sequences: 37544
Number of extensions: 188079
Number of successful extensions: 1034
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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