Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H09f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical p...    28   4.7  
Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical pr...    28   4.7  

>Z46787-15|CAO78702.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +3

Query: 99  PGA--GAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDM-GTHNVSSPAIRVS 269
           PG+  GAPP     P     PP +HH+             GGSG + G      P    S
Sbjct: 13  PGSPCGAPPSLTFTPPATLVPPTHHHSRSTNRGGVSGTGGGGSGGLQGAPGAGGPRASHS 72

Query: 270 TPATN 284
           +  T+
Sbjct: 73  SRRTS 77


>Z35596-1|CAO78712.1|  829|Caenorhabditis elegans Hypothetical
           protein C30D11.1a protein.
          Length = 829

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
 Frame = +3

Query: 99  PGA--GAPPHELPHPAPNGAPPDNHHNXXXXXXXXXXXXAGGSGDM-GTHNVSSPAIRVS 269
           PG+  GAPP     P     PP +HH+             GGSG + G      P    S
Sbjct: 13  PGSPCGAPPSLTFTPPATLVPPTHHHSRSTNRGGVSGTGGGGSGGLQGAPGAGGPRASHS 72

Query: 270 TPATN 284
           +  T+
Sbjct: 73  SRRTS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,159,715
Number of Sequences: 27780
Number of extensions: 124106
Number of successful extensions: 623
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)