Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333H07f
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 45 6e-06
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 42 3e-05
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 42 4e-05
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 36 0.004
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 34 0.009
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 34 0.012
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 33 0.027
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 32 0.036
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 31 0.062
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 31 0.083
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 31 0.11
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 30 0.14
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 29 0.33
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 0.33
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 29 0.33
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 44.8 bits (101), Expect = 6e-06
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDE 117
QTRPV +YRLI+ TIEE I ++A KL LE +T + E
Sbjct: 878 QTRPVHVYRLITKNTIEENIRRLANTKLTLESSLTTDSE 916
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 42.3 bits (95), Expect = 3e-05
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDENEPTEQKNVVRLL 156
Q +PVT+YR I+ TIEE I V ++K L K +EN P + + LL
Sbjct: 839 QQKPVTVYRFITKDTIEERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELL 890
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 41.9 bits (94), Expect = 4e-05
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDENEPTEQKNV 144
Q + VT+YR I+ GTIEE I A+EK ++K V E PT+Q ++
Sbjct: 1543 QQKQVTVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETRPTKQMDL 1590
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 35.5 bits (78), Expect = 0.004
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHV--TGEDENEPTEQKNVVRLLS 159
QT+ V IYRLI+ ++EE I AQ KL+++ V G+ +N+ T ++ L S
Sbjct: 851 QTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAFLRS 905
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 34.3 bits (75), Expect = 0.009
Identities = 20/47 (42%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVT--GEDENEPTEQ 135
Q R VT+ RLI+ TIEE I ++A KL L+ ++ G+D E E+
Sbjct: 1038 QVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDREEIGER 1084
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 33.9 bits (74), Expect = 0.012
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHV--TGEDENEPTEQKNVVRLLS 159
QT+ V I RLI+ +IEE I AQ KL+L+ V G+ +N+ T ++ L S
Sbjct: 1302 QTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQAGKFDNKSTPEEREAFLRS 1356
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 32.7 bits (71), Expect = 0.027
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDENEPTE 132
Q + VT+Y+ + TIEE I ++A K+ L+ ++G E E
Sbjct: 875 QKKEVTVYKFVVKDTIEEHIQRLANAKIALDATLSGNAETVEAE 918
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 32.3 bits (70), Expect = 0.036
Identities = 17/34 (50%), Positives = 22/34 (64%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHV 102
QTR V IYRLIS T+E + + A +K L+K V
Sbjct: 1105 QTRDVHIYRLISEYTVESNMLRRANQKRMLDKIV 1138
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 31.5 bits (68), Expect = 0.062
Identities = 13/21 (61%), Positives = 17/21 (80%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIY 63
Q + V +YRL++AGTIEE IY
Sbjct: 740 QKKDVVVYRLMTAGTIEEKIY 760
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 31.1 bits (67), Expect = 0.083
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDEN 120
Q + +YR I+ GTIEE I+Q K +L V E ++
Sbjct: 726 QKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQD 765
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 30.7 bits (66), Expect = 0.11
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDENEPTEQKNV 144
Q R V +Y+L+ TIEE I ++ K +L K G+ + K +
Sbjct: 768 QRRDVLVYKLVVENTIEEKIVELQNLKRDLAKQALGDGKKSVFTSKKL 815
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 30.3 bits (65), Expect = 0.14
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLE 93
Q V +YRL+S TIEE + + A+ K+ LE
Sbjct: 805 QKNHVMVYRLLSKDTIEEDVLERARRKMILE 835
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLE 93
Q V +YR +S T+EE I + A+ K+ LE
Sbjct: 819 QKNHVNVYRFLSKDTVEEDILERARRKMILE 849
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.1 bits (62), Expect = 0.33
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGEDENEPTEQKNVVRLLSAALGLTS 180
Q +PV I R+++ TIEE + + K L GE + N + LS G++S
Sbjct: 981 QDKPVNILRIVTNNTIEERVLALQDRKRELIDSALGEKGLREISRLN-TKELSFLFGMSS 1039
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 29.1 bits (62), Expect = 0.33
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 1 QTRPVTIYRLISAGTIEEGIYQVAQEKLNLEKHVTGE 111
Q + V +YRLI+ G +EE I + + K+N+ V +
Sbjct: 1837 QKKVVNVYRLITRGCLEEKIMGLQRFKMNVASTVVNQ 1873
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,473
Number of Sequences: 5004
Number of extensions: 21733
Number of successful extensions: 67
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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