Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H07f
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    27   0.095
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   2.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   6.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   6.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   6.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   8.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 0.095
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -3

Query: 171 AQRGGQQPDDVLLLRRFVLIFSGDVFL*IKFLLRDLIYSLL 49
           AQ    +P+DVL++   +L +   VF  +   +  L+Y+++
Sbjct: 311 AQNSKDKPEDVLIIIYTILTYMSGVFYYLSTTVNPLLYNIM 351


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 374 PLNFXIGPLVPEISAFXQ 321
           PLN   GP++PE S   Q
Sbjct: 648 PLNVPYGPVIPEQSLTYQ 665


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 174 EAQRGGQQPDDVLLLRR 124
           E +RG   P+DV+L RR
Sbjct: 146 ELKRGIINPEDVMLKRR 162


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 174 EAQRGGQQPDDVLLLRR 124
           E +R    P+DV+L+RR
Sbjct: 149 EVKRDTINPEDVILIRR 165


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.0 bits (42), Expect = 6.3
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 174 EAQRGGQQPDDVLLLRR 124
           E +R    P+DV+L+RR
Sbjct: 149 EVKRDTINPEDVILIRR 165


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 194 VHLLGEVRPSAADSSRTTFFCSVGSFS 114
           +++LG +    ADS  T F+ S+ + +
Sbjct: 359 LNILGNIIEGNADSYNTEFYGSIDTLA 385


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 194 VHLLGEVRPSAADSSRTTFFCSVGSFS 114
           +++LG +    ADS  T F+ S+ + +
Sbjct: 359 LNILGNIIEGNADSYNTEFYGSIDTLA 385


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 179 EVRPSAADSSRTTFFCSVGSFSSS 108
           E RP   +  R + FC +  ++ S
Sbjct: 223 EERPKGINGRRASLFCGLQKYTRS 246


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -1

Query: 179 EVRPSAADSSRTTFFCSVGSFSSS 108
           E RP   +  R + FC +  ++ S
Sbjct: 218 EERPKGINGRRASLFCGLQKYTRS 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,423
Number of Sequences: 438
Number of extensions: 1644
Number of successful extensions: 28
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)