Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333H05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 34 0.080
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 29 1.7
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 29 2.3
06_03_1458 + 30301585-30301775,30302131-30302245,30302345-303024... 28 5.2
01_05_0645 - 23899579-23904483 28 5.2
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 27 6.9
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 9.1
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 9.1
08_02_0010 - 11230407-11232416 27 9.1
08_02_0009 + 11216532-11218687,11220727-11225998 27 9.1
08_02_0006 + 11204835-11206382 27 9.1
08_02_0003 + 11180421-11180757,11180773-11185715 27 9.1
08_02_0002 + 11173365-11173512,11173528-11178470 27 9.1
08_01_1086 - 11150017-11151564 27 9.1
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 27 9.1
05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361 27 9.1
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755... 27 9.1
03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237 27 9.1
02_02_0537 + 11308195-11309667 27 9.1
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 33.9 bits (74), Expect = 0.080
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 383 PKATTSTTKTGRLRKRSHSLRPSHFSEPCPRHSLRPPTKR-LSYQP 517
P A +ST + + RK S PS P PRH PP R L +QP
Sbjct: 347 PAAGSSTPSSSQARKASAPAPPSPPEPPSPRHPASPPLLRSLPHQP 392
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 383 PKATTSTTKTGRLRKR----SHSLRPSHFSEPCPRHSLRPPTKRLS 508
P ATT+TT+ G + + S+ P EP P H + PP R S
Sbjct: 135 PAATTTTTRGGDASRAQVLVAPSMAPRRHREPEPPHPVLPPAGRRS 180
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +2
Query: 326 RKLREMKNTTTRMSC*KIFPKATTSTTKTGRLRKRSHSLRPSHFSEPCP 472
RKL E+++ TR SC + T + R+ +R+ SLRPSH +EP P
Sbjct: 47 RKLDELRDHITR-SC-----EITDQPRERHRMSRRTASLRPSH-AEPPP 88
>06_03_1458 +
30301585-30301775,30302131-30302245,30302345-30302430,
30302552-30302662,30303154-30303208,30303327-30303437,
30304347-30304403,30304847-30305016,30305103-30305210,
30305643-30305716,30305757-30305779,30306188-30306283,
30306502-30306582,30306934-30307068,30307162-30307227,
30307283-30307297
Length = 497
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 79 RLGKLYEKLEKITIAPTPDNFGSNSKDKLYAKLERFNA 192
RLG ++ L+++ A P+ + +KL+ RFNA
Sbjct: 26 RLGVYHDVLQRLRDAGAPEALAPDFAEKLWTHFHRFNA 63
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.9 bits (59), Expect = 5.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 1506 IYIMNRQFNFQEDGPSKLSDEEEEIYTTIANHENWRLFSEAAEI 1549
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 988 IYIMKGQFNFQEDGPSKLSDEEEEIYTTVANHENWRLFSEAAEI 1031
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 58 ETPSFIDRLGKLYEKLEKITIAPTPDNFGSNSKDKLYAKLERFNA 192
E+P FI + L + LEK+ P + G+ S + L A + NA
Sbjct: 155 ESPMFIAAMRDLADVLEKVLEIPNSSHVGACSYNALAAAVRNGNA 199
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 1229 IYIMNGQFNFQEDGPSKLSDEEEEIYTTIANHENWRLFSEAAEI 1272
>08_02_0010 - 11230407-11232416
Length = 669
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 541 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 584
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 2347 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 2390
>08_02_0006 + 11204835-11206382
Length = 515
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 387 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 430
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 1631 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 1674
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 1568 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 1611
>08_01_1086 - 11150017-11151564
Length = 515
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 387 IYIMKGQFNFQEDGLSKLSDEEEEIYTTVANHENWRLFSEAAEI 430
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 294 LHYNIHLISTEPPLLHSRYQL 232
LH I ++S PP LH RYQL
Sbjct: 914 LHKIILIVSKFPPKLHMRYQL 934
>05_04_0285 - 19825106-19826988,19828479-19828529,19830013-19830361
Length = 760
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/30 (40%), Positives = 13/30 (43%)
Frame = +2
Query: 383 PKATTSTTKTGRLRKRSHSLRPSHFSEPCP 472
P ST TG +HS RP H P P
Sbjct: 20 PPPVASTVFTGHRHLTTHSRRPRHHYRPLP 49
>03_05_0728 - 27174157-27174408,27175316-27175364,27175454-27175536,
27175673-27175753,27175838-27175894,27176103-27176202,
27176280-27176350,27176427-27176567,27176657-27176863,
27177442-27177612,27177735-27177815,27177887-27177940,
27178040-27178154,27178302-27178441,27178976-27179197,
27179278-27179376,27179461-27179580,27179776-27179981,
27180072-27180249,27180426-27180486,27180587-27180696,
27180765-27180896,27181124-27181165,27181592-27181762,
27181806-27181808,27181848-27181974,27182130-27182164,
27182982-27183083,27183167-27183224,27183314-27183415,
27183513-27183659,27183744-27183880,27183973-27184122,
27184234-27184393,27184930-27185075,27185162-27185305,
27185535-27185663,27186376-27186420,27187103-27187192,
27187473-27187475
Length = 1506
Score = 27.1 bits (57), Expect = 9.1
Identities = 21/89 (23%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Frame = +1
Query: 52 VTETPSFID---RLGKLYEKLEKITIAPTPDNFGSNSKDKLYAKLERFNALSPDKFELSD 222
+ ETP ++ ++ L ++E++ + + + K YA+ ER N KFE ++
Sbjct: 949 IKETPVLVEDTEKINSLTAEVEQLKALLQTERQATETAKKEYAEAERRNEELIKKFEGAE 1008
Query: 223 EE-EELISTMEKWGLSADQMDIIVKELQR 306
++ E+L T+++ A M+ K L++
Sbjct: 1009 KKIEQLQDTVQRLEEKATNMESENKVLRQ 1037
>03_01_0659 + 4829496-4829596,4830033-4830083,4832527-4834237
Length = 620
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = -3
Query: 285 NIHLISTEPPLLHSRYQLFFFIRQLEFIGRQRVKSLQLRVKLIFRIRSEIIRCGCYCDFF 106
N+ IS EP Y L + +L G KSL+ + F + S + C FF
Sbjct: 278 NMVSISGEPMQRLGAYMLEGLVARLSSTGHALYKSLKCKEPTSFELMSYMHLLYEICPFF 337
Query: 105 KF 100
KF
Sbjct: 338 KF 339
>02_02_0537 + 11308195-11309667
Length = 490
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 163 LYAKLERFNALSPDKFELSDEEEELISTM---EKWGLSADQMDI 285
+Y +FN +LSDEEEE+ +T+ E W L ++ +I
Sbjct: 387 IYIMNGQFNFQEDGPSKLSDEEEEIYTTIANHENWRLFSEAAEI 430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.129 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,230,112
Number of Sequences: 37544
Number of extensions: 248063
Number of successful extensions: 597
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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