Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...   107   7e-25
SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...   105   4e-24
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    27   2.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.0  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   6.8  

>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score =  107 bits (258), Expect = 7e-25
 Identities = 56/148 (37%), Positives = 82/148 (55%), Gaps = 3/148 (2%)
 Frame = +3

Query: 30  WEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLI 209
           W + L E+ +F TVE+FW ++  I   S L    DY+ F +GIRP WED  N  GG+W  
Sbjct: 84  WSDLLKEIISFKTVEEFWGIFKTISKASMLPAKSDYSYFLKGIRPEWEDPQNMNGGKW-- 141

Query: 210 SLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHA 386
           + + K + ++LD  WL +VL  IGE  +    E+ G V N+R    +IA+WT +   +  
Sbjct: 142 AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEVTGVVCNMRKGFYRIAVWTRNCNDKDV 201

Query: 387 TIEIGKKLKEQLGIHGK--IGFQVHRDT 464
             +IG + KE LGI  K  I +  H D+
Sbjct: 202 LEKIGLRFKEVLGISDKETIEYSAHEDS 229


>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score =  105 bits (252), Expect = 4e-24
 Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 3/148 (2%)
 Frame = +3

Query: 30  WEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLI 209
           W E    + TF++VE+FW ++++I   S L    DY+ F++G+RP WED  NK GG+W  
Sbjct: 58  WNELQKNIITFNSVEEFWGIHNNINPASSLPIKSDYSFFREGVRPEWEDVHNKTGGKWAF 117

Query: 210 SLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEICGAVVNVRPKVDKIAIWTADAMKQHA 386
              K +    LD  WL  VL  IGE  +    E+ G V+N+R    ++A+WT     +  
Sbjct: 118 Q-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEVMGVVINMRKGFYRLAVWTKSCNNREV 176

Query: 387 TIEIGKKLKEQLGI--HGKIGFQVHRDT 464
            +EIG + K+ L +     I F  H D+
Sbjct: 177 LMEIGTRFKQVLNLPRSETIEFSAHEDS 204


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 363 ADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHS 479
           A++ K  +T+     +K      GK G ++  D M+KH+
Sbjct: 63  ANSTKSTSTVTTASPIKYDSSFVGKTGGEIFHDMMLKHN 101


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 27/99 (27%), Positives = 46/99 (46%)
 Frame = -2

Query: 319  TAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIGRMPCLNT 140
            T+P +S    + S I   +TSN N+  S    F S + +        +S+ I +   LN+
Sbjct: 3801 TSPSLSETIPQSSSISEASTSNPNILSSTVLSFDSTITNS----FTTASTSIMKTTSLNS 3856

Query: 139  A*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVL 23
              S  W +S    + +YN   SSTV    ++ R +S+ +
Sbjct: 3857 N-SYKWYNSTTQSV-YYN-ATSSTVPWSNSTFRNTSNTM 3892


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 156 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 266
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 3   FYDNDRNKTWEENLIELTTF 62
           FY N +NK W  N  +L TF
Sbjct: 525 FYHNPKNKKWLINTSDLITF 544


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -2

Query: 202 HLPPILLASSSHIGRMPCLNT 140
           H+PP LLA+SS   R+P ++T
Sbjct: 140 HMPPNLLAASSARLRLPPIST 160


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,017,940
Number of Sequences: 5004
Number of extensions: 38370
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)