Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS333H04f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 138 2e-33
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 130 7e-31
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 120 5e-28
04_01_0556 - 7156851-7157096,7157288-7157530,7158112-7158153,715... 30 1.3
02_05_0461 - 29242711-29242864,29242992-29243059,29243500-292435... 29 2.3
02_04_0430 + 22834405-22834839 29 2.3
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 28 4.0
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 4.0
11_08_0035 - 27838495-27838655,27838750-27838897,27838987-278391... 24 4.4
02_02_0106 + 6814391-6817007,6817086-6817462 28 5.2
05_04_0085 + 17790417-17790714,17791826-17791869,17793658-177937... 27 6.9
10_08_0391 + 17486109-17486210,17487032-17487129,17487331-174873... 27 9.1
09_02_0154 + 5055946-5058721,5058754-5058770 27 9.1
04_04_1313 - 32572594-32573793,32573827-32573832 27 9.1
04_04_0439 - 25207950-25209629 27 9.1
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 138 bits (335), Expect = 2e-33
Identities = 72/162 (44%), Positives = 96/162 (59%), Gaps = 4/162 (2%)
Frame = +3
Query: 3 FYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMW 170
++DN + K TW ++ + TF TVEDFW LY++I PS+L G D+ FK I P W
Sbjct: 61 WFDNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNIHHPSKLVVGADFHCFKNKIEPKW 120
Query: 171 EDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKI 350
ED GG+W S + + D WL +L +IGE F+ DEICGAVV+VR K ++I
Sbjct: 121 EDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQFDYGDEICGAVVSVRGKQERI 176
Query: 351 AIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKH 476
AIWT +A + A I IGK+ KE L IGF VH D + K+
Sbjct: 177 AIWTKNAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKY 218
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 130 bits (314), Expect = 7e-31
Identities = 59/144 (40%), Positives = 86/144 (59%)
Frame = +3
Query: 30 WEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGGRWLI 209
W +L + TFDTVE+FW LY I PS++ D+ +FK G+ P WED GG+W +
Sbjct: 52 WGTSLRKAYTFDTVEEFWGLYDQIFRPSKVTVNADFHLFKAGVEPKWEDPECANGGKWTV 111
Query: 210 SLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMKQHAT 389
+K T L+ WL+ ++ LIGE F+ S+EICG V +VR + DK+A+WT A +
Sbjct: 112 PCSRK---TTLENMWLETLMALIGEQFDESEEICGVVASVRQRGDKLALWTRTASNEAVQ 168
Query: 390 IEIGKKLKEQLGIHGKIGFQVHRD 461
+ IGKK KE + + K+ + H D
Sbjct: 169 VNIGKKWKEIVDYNDKMVYSFHDD 192
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 120 bits (290), Expect = 5e-28
Identities = 56/162 (34%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = +3
Query: 18 RNKTWEENLIELTTFDTVEDFWRLYHHIKLPSELRQGHDYAVFKQGIRPMWEDDANKMGG 197
R++++E+N+ ++ F TVE FW Y H+ P L D +FK+GIRP+WED AN+ GG
Sbjct: 67 RSQSYEDNIKKIVDFSTVESFWVCYCHLTRPVSLPSPTDLHLFKEGIRPLWEDPANRSGG 126
Query: 198 RWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVRPKVDKIAIWTADAMK 377
+W+I +K T RFW D+VL+L+G+ + SD++CG V++VR D +++W +A
Sbjct: 127 KWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVCGVVLSVRFNEDILSVWNRNASD 182
Query: 378 QHATIEIGKKLKEQLGI-HGKIGFQVHRDTMVKHSSATXNLY 500
A + + +K L + H + D ++ +S+ N +
Sbjct: 183 HQAVMTLRDSIKRHLKLPHSYLMEYKPHDASLRDNSSYRNTW 224
>04_01_0556 -
7156851-7157096,7157288-7157530,7158112-7158153,
7158324-7158425,7159209-7159342,7161071-7161131,
7161192-7161284,7161557-7161639,7161984-7162239
Length = 419
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +3
Query: 345 KIAIWTADAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSAT 488
++A WT A+K + G L G+ VHR VKH +A+
Sbjct: 180 RVAFWTHQALKPLKQADKGSGLYAVYGLCKSYSISVHRPFHVKHPNAS 227
>02_05_0461 -
29242711-29242864,29242992-29243059,29243500-29243589,
29244026-29244733
Length = 339
Score = 29.1 bits (62), Expect = 2.3
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 11/94 (11%)
Frame = +3
Query: 207 ISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVV-NVRPKV----DKIAIWTADA 371
IS+ KK F D RF+ D + + E + + G + N+ K+ KI + +
Sbjct: 218 ISMYKKMWFPD--RFYKDYLKAMFNNRKERMELLQGLITSNMDAKIPTFQQKIMLIWGEE 275
Query: 372 MKQHATIEIGKKLKEQLG----IHG--KIGFQVH 455
K IE+ KK+KEQLG +HG K G +H
Sbjct: 276 DKIF-DIELAKKMKEQLGDGCFLHGIPKAGHLLH 308
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 220 FSRLISHLPPILLASSSHIGRM 155
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +1
Query: 94 IILSYRQ--NFAKVMTMQYSSKAFVLCGKTMLTRWEEDGLSVLRKNNALL 237
++LS+ Q A ++ M + + F L GKT + W + S ++KNN L
Sbjct: 351 VLLSHAQMVELANILDMYFEDQ-FTLPGKTFYSNWNSEP-SKIKKNNGYL 398
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +3
Query: 117 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 260
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>11_08_0035 -
27838495-27838655,27838750-27838897,27838987-27839192,
27839291-27839972,27840074-27840247,27840963-27841181,
27841281-27841400,27841540-27841680,27841762-27841801,
27841969-27842129,27842506-27842589,27842659-27842721,
27842808-27842885,27842980-27842984,27843228-27843313,
27843354-27843544,27844089-27844166,27844255-27844365,
27844757-27844927,27845026-27845198,27845748-27845928
Length = 1090
Score = 23.8 bits (49), Expect(2) = 4.4
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = +1
Query: 88 CTIILSYRQNFAKVMTMQYSSKAFVLC 168
CT++ +R++ +++T+Q+S C
Sbjct: 290 CTLVTRHRKHADEILTLQFSQPDGTYC 316
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 154 AFVLCGKTMLTRWEEDGLSVLRKN 225
A L GK +T WE+D +RKN
Sbjct: 352 ALALNGKD-ITEWEDDTDEYMRKN 374
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 5.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -2
Query: 307 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 152
+ SE K SP+ SN NLS + CF +L S I++ ++S G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403
>05_04_0085 +
17790417-17790714,17791826-17791869,17793658-17793793,
17794315-17794391,17794646-17794706,17794707-17794924,
17795168-17795412,17796032-17796401,17796916-17797344
Length = 625
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Frame = +3
Query: 195 GRWLISLEKKQRFTDLDRFWLDVVLLLIGE------NFENS-DEICGAVVNVRPKVDKIA 353
G W + + +R ++DR ++L +IG N ENS D++ G +V K ++
Sbjct: 358 GYWYLPTKNNRRMREIDREVRKILLEIIGNKERAITNGENSNDDMLGLLVESNTKQPELR 417
Query: 354 IWTADAMKQ 380
+ T D +++
Sbjct: 418 MSTDDIIEE 426
>10_08_0391 +
17486109-17486210,17487032-17487129,17487331-17487361,
17487655-17487707,17489254-17489402,17489828-17489898,
17489988-17490131,17490249-17490309,17492180-17492265,
17492839-17492926,17494012-17494142,17494266-17494394
Length = 380
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 172 KTMLTRWEEDGLSVLRKNNALLI*IG 249
KT++T EDG S+L +NN LL+ IG
Sbjct: 71 KTLMT--PEDGGSILCRNNVLLVLIG 94
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 288 NFHQLKEEPHLTRTYLNQ*SVVFSQD 211
N QLK E H+ + +L Q + FSQD
Sbjct: 42 NMRQLKIEFHVMKAFLTQQQIHFSQD 67
>04_04_1313 - 32572594-32573793,32573827-32573832
Length = 401
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 190 ILLASSSHIGRMPCLNTA*S*PWRSSDGSLI*WYNLQKSSTVSNVVNSIRFSSHVLFRSL 11
+LL S H+ ++ L A +S+DG+ + +N T+ V+ + S H L R+L
Sbjct: 241 VLLVPSEHVTKIKHLTDAQEEELKSADGNQVNSFNRIIRKTIHPVIGD-KGSMHALIRAL 299
>04_04_0439 - 25207950-25209629
Length = 559
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +3
Query: 81 WRLYHHIKLPSELRQGHDYAVFKQGIRPMWE 173
WR HH+ R GHD + +RPM E
Sbjct: 156 WRALHHVLK----RTGHDVTAYLDALRPMEE 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,846,895
Number of Sequences: 37544
Number of extensions: 236366
Number of successful extensions: 588
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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