Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS333H03f
         (442 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...   110   8e-26
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...   109   2e-25
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   3.9  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   5.2  
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    24   9.0  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score =  110 bits (265), Expect = 8e-26
 Identities = 51/88 (57%), Positives = 63/88 (71%)
 Frame = -3

Query: 362 EAAKALXKRQAVLCVLAENCDEAAYKKLVQALCNXHQIPLVKVXXXKKLGEWAGXXKIXK 183
           EA+KAL +RQA LCVL E+CD+ AY KLV+ALC   Q PLVKV   K LGEWAG   + +
Sbjct: 55  EASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPKILGEWAGLCVLDR 114

Query: 182 DXKXRKIVGCSCVVIKDFGEETPALDVL 99
           D   RK+VGCSCV + D+GE++ AL  L
Sbjct: 115 DGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score =  109 bits (261), Expect = 2e-25
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = -3

Query: 362 EAAKALXKRQAVLCVLAENCDEAAYKKLVQALCNXHQIPLVKVXXXKKLGEWAGXXKIXK 183
           EA+KAL +RQA LCVL E+CD+ AY KLV+ALC   + PL+KV   K LGEWAG   + +
Sbjct: 52  EASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESETPLIKVADPKVLGEWAGLCVLDR 111

Query: 182 DXKXRKIVGCSCVVIKDFGEETPALDVL 99
           D   RK+VGCSCV + D+GE++ AL  L
Sbjct: 112 DGNARKVVGCSCVAVTDYGEDSAALQKL 139


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 111 RWSFLXEIFDDNTGAADNFPXLXILXNL 194
           RW +L  +F  N  A  N P + +L  L
Sbjct: 257 RWEYLASLFTSNFTAVHNIPSVPLLHAL 284


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -1

Query: 316 WLRTVMKPHTRNLFRLCATXIRFHWSRLXXXKSLE 212
           ++ +V  P    L+RLC++  R  W      +SL+
Sbjct: 220 FILSVFHPDAARLYRLCSSLKRICWELYDPSRSLD 254


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = -3

Query: 362 EAAKALXKRQAVLCVLAENCDEAAYKKLVQALCNXHQIPLVKVXXXKKLGE 210
           E  KA+ K +  L +LA +         +  LC  + +P +     + LGE
Sbjct: 60  EVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGE 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,298,139
Number of Sequences: 5004
Number of extensions: 18781
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)